Variant report

Variant	rs11917587
Chromosome Location	chr3:141207575-141207576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141204551..141207938-chr3:141241119..141245308,6	MCF-7	breast:
2	chr3:141189849..141195094-chr3:141204829..141208801,7	MCF-7	breast:
3	chr3:141206855..141208513-chr3:141245393..141248171,2	MCF-7	breast:
4	chr3:141206890..141209130-chr3:141222372..141224478,3	MCF-7	breast:
5	chr3:141205921..141208089-chr3:141225217..141227159,2	MCF-7	breast:
6	chr3:141205894..141211656-chr3:141222007..141226023,7	K562	blood:
7	chr3:141206322..141208347-chr3:141274984..141277409,3	K562	blood:

Variant related genes	Relation type
ENSG00000250170	Chromatin interaction
ENSG00000215606	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11711375	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11916906	0.91[ASN][1000 genomes]
rs13069717	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366042	0.85[CEU][hapmap]
rs1493209	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1582875	0.83[CEU][hapmap]
rs16851435	0.89[JPT][hapmap]
rs16851438	0.94[JPT][hapmap]
rs16851441	0.89[JPT][hapmap]
rs16851483	0.88[JPT][hapmap]
rs1863867	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2035935	0.88[JPT][hapmap]
rs2035936	0.82[JPT][hapmap]
rs2042864	0.83[CEU][hapmap]
rs2172471	0.88[ASN][1000 genomes]
rs2312193	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs2639997	0.88[JPT][hapmap]
rs2639998	0.88[ASN][1000 genomes]
rs2640017	0.88[JPT][hapmap]
rs295299	0.88[JPT][hapmap]
rs295300	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs295320	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs295323	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs35711802	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3732869	0.89[JPT][hapmap]
rs3806646	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3821709	0.88[JPT][hapmap]
rs3821710	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3821712	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683610	0.88[JPT][hapmap]
rs6440013	0.93[ASN][1000 genomes]
rs6440015	0.87[ASN][1000 genomes]
rs6763498	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767158	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776003	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6785874	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795168	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800122	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6808837	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7627807	0.88[JPT][hapmap]
rs7632308	0.89[CEU][hapmap]
rs7643837	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9813177	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9878347	0.94[JPT][hapmap]
rs9879503	0.94[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11917587	RASA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141204200-141208000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr3:141205000-141207600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:141205400-141207600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:141205400-141207800	Active TSS	Right Ventricle	heart
5	chr3:141205600-141207600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:141205800-141207600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:141205800-141207800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141206400-141207800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:141206600-141208200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:141206800-141208200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:141206800-141208200	Flanking Active TSS	HUVEC	blood vessel
12	chr3:141206800-141208400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr3:141206800-141208600	Flanking Active TSS	Dnd41	blood
14	chr3:141206800-141217400	Weak transcription	Spleen	Spleen
15	chr3:141207000-141207600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:141207000-141207600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr3:141207000-141207600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr3:141207000-141207600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr3:141207000-141207600	Weak transcription	Ovary	ovary
20	chr3:141207000-141207800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr3:141207000-141207800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:141207000-141207800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:141207000-141207800	Flanking Active TSS	HMEC	breast
24	chr3:141207000-141208000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:141207000-141208400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr3:141207000-141208600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:141207000-141209400	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr3:141207000-141216600	Weak transcription	Small Intestine	intestine
29	chr3:141207000-141217400	Weak transcription	Left Ventricle	heart
30	chr3:141207000-141235800	Weak transcription	Gastric	stomach
31	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
32	chr3:141207200-141207600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr3:141207200-141207800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr3:141207200-141207800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:141207200-141207800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr3:141207200-141207800	Flanking Active TSS	Hela-S3	cervix
37	chr3:141207200-141207800	Flanking Active TSS	Osteobl	bone
38	chr3:141207200-141208000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:141207200-141208000	Enhancers	Colon Smooth Muscle	Colon
40	chr3:141207200-141208200	Enhancers	Primary B cells from peripheral blood	blood
41	chr3:141207200-141208400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:141207200-141208400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr3:141207200-141208600	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr3:141207200-141209200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
45	chr3:141207200-141217400	Weak transcription	Psoas Muscle	Psoas
46	chr3:141207400-141207600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr3:141207400-141207600	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr3:141207400-141207600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr3:141207400-141207600	Enhancers	Adipose Nuclei	Adipose
50	chr3:141207400-141207600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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