Variant report

Variant	rs16851441
Chromosome Location	chr3:141173521-141173522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141172850..141174604-chr3:141209853..141211525,2	MCF-7	breast:
2	chr3:141025929..141033510-chr3:141171081..141179408,10	MCF-7	breast:
3	chr3:141119971..141122596-chr3:141173473..141175987,4	MCF-7	breast:
4	chr3:141030727..141031717-chr3:141173430..141174425,2	K562	blood:
5	chr3:141085844..141090637-chr3:141172239..141176083,8	MCF-7	breast:
6	chr3:141084648..141088549-chr3:141172324..141176689,9	MCF-7	breast:
7	chr3:141172536..141178199-chr3:141203718..141209390,5	K562	blood:
8	chr3:141021977..141022870-chr3:141173450..141174169,3	K562	blood:
9	chr3:140992139..140994461-chr3:141173161..141175634,3	MCF-7	breast:
10	chr3:141023419..141025607-chr3:141171594..141173582,2	K562	blood:
11	chr3:141173421..141179159-chr3:141204636..141208201,13	MCF-7	breast:
12	chr3:141158936..141162571-chr3:141173016..141176156,4	MCF-7	breast:
13	chr3:141151481..141154475-chr3:141171765..141174215,2	K562	blood:
14	chr3:141164105..141166380-chr3:141168817..141173824,4	K562	blood:
15	chr3:141079477..141080357-chr3:141173225..141175092,7	MCF-7	breast:
16	chr3:141172749..141175132-chr3:141195060..141197634,2	K562	blood:
17	chr3:141082713..141089087-chr3:141169228..141173800,5	K562	blood:
18	chr3:141025955..141033087-chr3:141172047..141179174,18	MCF-7	breast:
19	chr3:141128423..141130797-chr3:141173455..141176523,3	MCF-7	breast:
20	chr3:141172650..141176530-chr3:141204410..141207330,5	MCF-7	breast:
21	chr3:141030635..141031495-chr3:141173452..141173958,2	MCF-7	breast:
22	chr3:141172263..141174697-chr3:141274621..141277258,2	MCF-7	breast:
23	chr3:141086388..141089087-chr3:141172300..141173817,2	K562	blood:
24	chr3:141020025..141022458-chr3:141172566..141174680,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction
ENSG00000155893	Chromatin interaction
ENSG00000249540	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11711375	0.88[JPT][hapmap]
rs11917587	0.89[JPT][hapmap]
rs1493209	0.89[JPT][hapmap]
rs16851435	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16851438	0.82[CEU][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16851483	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1863867	0.89[JPT][hapmap]
rs2035935	1.00[JPT][hapmap]
rs2035936	0.94[JPT][hapmap]
rs2312193	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2639997	1.00[JPT][hapmap]
rs2640017	1.00[JPT][hapmap]
rs295299	1.00[JPT][hapmap]
rs295300	1.00[JPT][hapmap]
rs295320	0.88[JPT][hapmap]
rs295323	0.88[JPT][hapmap]
rs34558081	0.81[ASN][1000 genomes]
rs3732869	1.00[JPT][hapmap]
rs3806646	0.89[JPT][hapmap]
rs3806648	0.80[ASN][1000 genomes]
rs3821709	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3821710	0.88[JPT][hapmap]
rs3821712	0.88[JPT][hapmap]
rs4683404	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs4683610	1.00[JPT][hapmap]
rs62282002	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6767158	0.88[JPT][hapmap]
rs6785874	0.88[JPT][hapmap]
rs6795168	0.89[JPT][hapmap]
rs6800122	0.88[JPT][hapmap]
rs6808837	0.88[JPT][hapmap]
rs7626871	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7627774	0.81[ASN][1000 genomes]
rs7627807	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7643837	0.88[JPT][hapmap]
rs9878347	0.84[JPT][hapmap]
rs9879503	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16851441	ZBTB38	cis	multi-tissue	Pritchard
rs16851441	ZBTB38	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:141163000-141174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:141164000-141174000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:141164200-141173600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:141164200-141176400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:141164400-141173600	Weak transcription	Colonic Mucosa	Colon
7	chr3:141164600-141173600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:141164800-141174400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:141165000-141173800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:141166400-141173600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:141166600-141173600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:141166600-141174200	Weak transcription	Ovary	ovary
13	chr3:141166600-141174600	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:141166600-141176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:141166600-141181600	Weak transcription	Pancreas	Pancrea
16	chr3:141166800-141173600	Weak transcription	Adipose Nuclei	Adipose
17	chr3:141166800-141173800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:141166800-141174000	Weak transcription	NHEK	skin
19	chr3:141166800-141176400	Weak transcription	HMEC	breast
20	chr3:141166800-141179200	Weak transcription	Fetal Brain Male	brain
21	chr3:141167400-141176600	Weak transcription	HSMM	muscle
22	chr3:141168000-141173800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:141168200-141173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:141168400-141179200	Weak transcription	Fetal Heart	heart
25	chr3:141168600-141181800	Weak transcription	Aorta	Aorta
26	chr3:141169000-141179000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:141169400-141173600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:141170000-141173600	Weak transcription	Placenta	Placenta
29	chr3:141171000-141173600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:141171400-141173600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:141171400-141173600	Weak transcription	Fetal Intestine Small	intestine
32	chr3:141171400-141173600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:141171400-141173600	Weak transcription	HUVEC	blood vessel
34	chr3:141171400-141173800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr3:141171400-141174000	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:141171400-141174000	Weak transcription	Fetal Lung	lung
37	chr3:141171400-141174000	Weak transcription	GM12878-XiMat	blood
38	chr3:141171400-141179200	Weak transcription	Small Intestine	intestine
39	chr3:141171600-141173600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr3:141171600-141173600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:141171600-141173600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr3:141171600-141173600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr3:141171600-141173800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:141171600-141173800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:141171600-141173800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:141171600-141174400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:141171600-141179000	Weak transcription	Brain Anterior Caudate	brain
48	chr3:141171800-141173800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:141172000-141173600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:141172200-141174400	Weak transcription	HSMMtube	muscle

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