Variant report

Variant	rs16851435
Chromosome Location	chr3:141162185-141162186
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:141159946-141163964	U87	brain:	n/a	n/a
2	POLR2A	chr3:141162162-141162897	GM12878	blood:	n/a	n/a
3	POLR2A	chr3:141161815-141164620	GM12878	blood:	n/a	n/a
4	POLR2A	chr3:141161255-141162994	U87	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141160175..141161761-chr3:141162078..141164256,2	MCF-7	breast:
2	chr3:141153602..141155121-chr3:141161905..141164739,2	K562	blood:
3	chr3:141156646..141158952-chr3:141162167..141164221,2	K562	blood:
4	chr3:141158936..141162571-chr3:141173016..141176156,4	MCF-7	breast:
5	chr3:141160372..141162712-chr3:141168318..141171011,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZBTB38	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11711375	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs11917587	0.89[JPT][hapmap]
rs1493209	0.89[JPT][hapmap]
rs16851438	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16851441	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1863867	0.89[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs295320	0.87[CHD][hapmap];0.89[JPT][hapmap]
rs295323	0.87[CHD][hapmap];0.89[JPT][hapmap]
rs3806646	0.89[JPT][hapmap]
rs3821710	0.87[CHD][hapmap];0.88[JPT][hapmap]
rs3821712	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs4683404	0.83[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs62282002	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6767158	0.84[CHD][hapmap];0.88[JPT][hapmap]
rs6785874	0.87[CHD][hapmap];0.89[JPT][hapmap]
rs6795168	0.89[JPT][hapmap]
rs6800122	0.87[CHD][hapmap];0.89[JPT][hapmap]
rs6808837	0.87[CHD][hapmap];0.89[JPT][hapmap]
rs7626871	0.91[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7643837	0.87[CHD][hapmap];0.89[JPT][hapmap]
rs9878347	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9879503	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16851435	FLJ35036	cis	multi-tissue	Pritchard
rs16851435	ZBTB38	cis	multi-tissue	Pritchard
rs16851435	ZBTB38	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:141148800-141164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:141149400-141164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:141153200-141164000	Weak transcription	Psoas Muscle	Psoas
5	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
6	chr3:141156400-141166600	Strong transcription	Fetal Intestine Large	intestine
7	chr3:141159400-141162200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:141159600-141165400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:141159800-141164600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:141160400-141162200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:141160400-141162400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:141160400-141165200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:141160400-141166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:141160400-141166600	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:141160400-141166800	Strong transcription	A549	lung
16	chr3:141160400-141167400	Strong transcription	HSMM	muscle
17	chr3:141160400-141169600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:141160600-141163400	Strong transcription	Fetal Intestine Small	intestine
20	chr3:141160600-141166600	Strong transcription	HepG2	liver
21	chr3:141160600-141166800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr3:141160800-141166600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:141161000-141162400	Enhancers	Right Atrium	heart
24	chr3:141161000-141163200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:141161000-141164200	Strong transcription	Brain Cingulate Gyrus	brain
26	chr3:141161000-141165000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:141161000-141165200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:141161000-141165800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:141161000-141166800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:141161000-141166800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:141161200-141162600	Strong transcription	Thymus	Thymus
32	chr3:141161200-141163400	Strong transcription	Hela-S3	cervix
33	chr3:141161200-141164200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:141161200-141164200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:141161200-141164400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr3:141161200-141164600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:141161200-141164600	Genic enhancers	Osteobl	bone
38	chr3:141161200-141164800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr3:141161200-141164800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr3:141161200-141165000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:141161200-141165800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:141161200-141166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:141161200-141166400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:141161200-141166600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr3:141161200-141166600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:141161200-141166600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr3:141161200-141166600	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr3:141161200-141166800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:141161200-141166800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:141161200-141166800	Strong transcription	Adipose Nuclei	Adipose

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