Variant report

Variant	rs1582875
Chromosome Location	chr3:141192125-141192126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141189849..141195094-chr3:141204829..141208801,7	MCF-7	breast:
2	chr3:141191426..141193319-chr3:141205766..141208631,2	K562	blood:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11711375	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11916906	0.81[EUR][1000 genomes]
rs11917587	0.83[CEU][hapmap]
rs13069717	0.90[EUR][1000 genomes]
rs1366042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1493209	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1863867	0.82[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2042864	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2312193	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs295320	0.96[CEU][hapmap]
rs295323	0.92[CEU][hapmap];0.91[YRI][hapmap]
rs35711802	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3806646	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3821710	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs3821712	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6763498	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6767158	0.96[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6773734	0.99[ASN][1000 genomes]
rs6776003	0.83[CEU][hapmap]
rs6785874	0.96[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6795168	0.96[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6800122	0.96[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6808837	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7612543	0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7632308	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643837	0.96[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9289630	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9289631	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9813177	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9851256	0.88[CEU][hapmap]
rs9878347	0.82[CEU][hapmap];0.91[YRI][hapmap]
rs9879503	0.82[CEU][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1582875	RASA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141184600-141201000	Weak transcription	NHLF	lung
2	chr3:141189800-141194400	Weak transcription	Spleen	Spleen
3	chr3:141190400-141195800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:141190400-141195800	Weak transcription	Osteobl	bone
5	chr3:141190600-141193800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:141190600-141195800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:141190600-141195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:141190800-141195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:141190800-141195800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:141190800-141195800	Weak transcription	NHDF-Ad	bronchial

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