Variant report

Variant	rs6776393
Chromosome Location	chr3:86985373-86985374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11127967	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11708953	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11720259	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12496631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12633088	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13073131	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13074417	0.88[EUR][1000 genomes]
rs13092422	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1347611	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1370032	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1370033	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1370034	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1370035	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1370036	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1370037	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1370038	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1473272	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1473273	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2028090	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34506181	0.89[EUR][1000 genomes]
rs4295171	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4859048	0.82[EUR][1000 genomes]
rs4859060	0.84[EUR][1000 genomes]
rs4859084	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6419886	0.84[EUR][1000 genomes]
rs6419887	0.84[EUR][1000 genomes]
rs6419888	0.84[EUR][1000 genomes]
rs6551477	0.84[EUR][1000 genomes]
rs6551498	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6551499	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6774777	0.83[EUR][1000 genomes]
rs6781697	0.90[EUR][1000 genomes]
rs6791881	0.84[EUR][1000 genomes]
rs6794181	0.83[EUR][1000 genomes]
rs6797991	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6803815	0.90[EUR][1000 genomes]
rs7614681	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623702	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7635070	0.84[EUR][1000 genomes]
rs7643907	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7649306	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7649317	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9837981	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9869786	0.82[EUR][1000 genomes]
rs9871001	0.89[EUR][1000 genomes]
rs9881446	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86972600-86986400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:86973400-86986200	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:86973600-86986000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:86979000-86986200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:86980200-86985800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:86980400-86985800	Weak transcription	HSMM	muscle
7	chr3:86980600-86986400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:86980600-86995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:86981000-86985800	Weak transcription	NHDF-Ad	bronchial
10	chr3:86981800-86987000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:86982000-86986000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:86983600-86985800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:86983800-86986200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:86984400-86985800	Weak transcription	NHEK	skin
15	chr3:86984800-86986000	Weak transcription	Adipose Nuclei	Adipose
16	chr3:86984800-86987000	Enhancers	Osteobl	bone
17	chr3:86985200-86987200	Enhancers	HMEC	breast
18	chr3:86985200-86987800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:86985200-86988000	Enhancers	HSMMtube	muscle
20	chr3:86985200-86988800	Enhancers	NHLF	lung

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