Variant report

Variant	rs1370038
Chromosome Location	chr3:86966639-86966640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11127967	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11708953	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11720259	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12496631	0.88[EUR][1000 genomes]
rs12497862	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12633088	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13064692	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13070989	0.82[ASN][1000 genomes]
rs13073131	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13074417	0.88[EUR][1000 genomes]
rs13074432	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs13087787	0.86[YRI][hapmap]
rs13088306	0.85[AFR][1000 genomes]
rs13092422	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13093618	0.82[ASN][1000 genomes]
rs1347611	0.88[EUR][1000 genomes]
rs1370032	0.88[EUR][1000 genomes]
rs1370033	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1370034	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1370035	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1370036	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1370037	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1473272	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1473273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2028090	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34506181	0.87[EUR][1000 genomes]
rs4295171	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4859048	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859060	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4859084	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4859107	0.87[YRI][hapmap]
rs6419886	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6419887	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6419888	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6551383	0.81[ASN][1000 genomes]
rs6551384	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6551477	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6551494	0.82[ASN][1000 genomes]
rs6551498	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6551499	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6774777	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6776393	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6781697	0.86[EUR][1000 genomes]
rs6791881	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6794181	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6797991	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6803815	0.86[EUR][1000 genomes]
rs7426518	0.82[ASN][1000 genomes]
rs7427084	0.82[ASN][1000 genomes]
rs7427577	0.82[ASN][1000 genomes]
rs7428262	0.82[ASN][1000 genomes]
rs7614681	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7623510	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7623702	0.90[EUR][1000 genomes]
rs7630422	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7633281	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7635070	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7638201	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7643213	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7643326	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7643907	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7649306	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7649317	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9681197	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9713182	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9713459	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9756085	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9809980	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9828863	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9831416	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9831548	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9833690	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9834197	0.82[AFR][1000 genomes]
rs9837981	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9842925	0.82[ASN][1000 genomes]
rs9845020	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9847167	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9868090	0.82[ASN][1000 genomes]
rs9869007	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9869433	0.81[ASN][1000 genomes]
rs9869786	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9871001	0.87[EUR][1000 genomes]
rs9881446	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9882146	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86964600-86971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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