Variant report

Variant	rs6419887
Chromosome Location	chr3:86961000-86961001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs11127961	0.87[ASN][1000 genomes]
rs11127962	0.84[ASN][1000 genomes]
rs11127967	0.84[EUR][1000 genomes]
rs11708953	0.84[EUR][1000 genomes]
rs11720259	0.83[EUR][1000 genomes]
rs12485477	0.87[ASN][1000 genomes]
rs12488464	0.87[ASN][1000 genomes]
rs12497862	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12633088	0.86[EUR][1000 genomes]
rs12714670	0.87[ASN][1000 genomes]
rs13064692	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13066960	0.87[ASN][1000 genomes]
rs13070989	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13073131	0.84[EUR][1000 genomes]
rs13082048	0.85[EUR][1000 genomes]
rs13087636	0.87[ASN][1000 genomes]
rs13088306	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13092422	0.84[EUR][1000 genomes]
rs13093618	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13097914	0.91[EUR][1000 genomes]
rs1370033	0.84[EUR][1000 genomes]
rs1370034	0.84[EUR][1000 genomes]
rs1370035	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1370036	0.85[EUR][1000 genomes]
rs1370037	0.85[EUR][1000 genomes]
rs1370038	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1473272	0.86[EUR][1000 genomes]
rs1473273	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2028090	0.84[EUR][1000 genomes]
rs4295171	0.83[EUR][1000 genomes]
rs4859048	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6419886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6419888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551383	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6551384	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6551477	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551494	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6551498	0.84[EUR][1000 genomes]
rs6551499	0.84[EUR][1000 genomes]
rs6774777	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776393	0.84[EUR][1000 genomes]
rs67915858	0.82[EUR][1000 genomes]
rs6791881	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794181	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797991	0.86[EUR][1000 genomes]
rs7426518	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7427084	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7427577	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7428262	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7614681	0.84[EUR][1000 genomes]
rs7623510	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7630422	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7633281	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7635070	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638201	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643213	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643326	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643907	0.87[EUR][1000 genomes]
rs7644095	0.85[EUR][1000 genomes]
rs7649306	0.87[EUR][1000 genomes]
rs7649317	0.87[EUR][1000 genomes]
rs7652100	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9284805	0.85[ASN][1000 genomes]
rs9284807	0.87[ASN][1000 genomes]
rs9284808	0.81[ASN][1000 genomes]
rs9284809	0.87[ASN][1000 genomes]
rs9310025	0.87[ASN][1000 genomes]
rs9310026	0.81[ASN][1000 genomes]
rs9310027	0.87[ASN][1000 genomes]
rs9310028	0.87[ASN][1000 genomes]
rs9310029	0.84[ASN][1000 genomes]
rs9310030	0.87[ASN][1000 genomes]
rs9310033	0.87[ASN][1000 genomes]
rs9310036	0.87[ASN][1000 genomes]
rs9310037	0.87[ASN][1000 genomes]
rs9310038	0.84[ASN][1000 genomes]
rs9310039	0.87[ASN][1000 genomes]
rs9681197	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9682104	0.83[ASN][1000 genomes]
rs9682583	0.87[ASN][1000 genomes]
rs9682971	0.87[ASN][1000 genomes]
rs9683172	0.87[ASN][1000 genomes]
rs9683187	0.87[ASN][1000 genomes]
rs9683191	0.87[ASN][1000 genomes]
rs9683301	0.87[ASN][1000 genomes]
rs9683310	0.87[ASN][1000 genomes]
rs9713014	0.87[ASN][1000 genomes]
rs9713018	0.87[ASN][1000 genomes]
rs9713182	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9713389	0.87[ASN][1000 genomes]
rs9713410	0.84[ASN][1000 genomes]
rs9713421	0.84[ASN][1000 genomes]
rs9713432	0.87[ASN][1000 genomes]
rs9713459	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9713574	0.87[ASN][1000 genomes]
rs9713693	0.84[ASN][1000 genomes]
rs9713794	0.87[ASN][1000 genomes]
rs9756085	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9756114	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9756702	0.87[ASN][1000 genomes]
rs9757447	0.87[ASN][1000 genomes]
rs9757801	0.87[ASN][1000 genomes]
rs9759006	0.87[ASN][1000 genomes]
rs9759053	0.87[ASN][1000 genomes]
rs9799281	0.85[ASN][1000 genomes]
rs9809980	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9812688	0.82[ASN][1000 genomes]
rs9826119	0.87[ASN][1000 genomes]
rs9828863	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9830914	0.85[ASN][1000 genomes]
rs9831416	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9831548	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9833690	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9837981	0.84[EUR][1000 genomes]
rs9842925	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9845020	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9847167	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9856526	0.85[ASN][1000 genomes]
rs9868090	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9868576	0.85[ASN][1000 genomes]
rs9869007	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9869433	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9869786	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881446	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882146	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9882953	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv877131	chr3:86875458-86961118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86960200-86963200	Weak transcription	HSMMtube	muscle

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