Variant report

Variant	rs67915858
Chromosome Location	chr3:86961974-86961975
allele	AA/GC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13074417	0.80[EUR][1000 genomes]
rs13082048	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13097914	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4859048	0.81[EUR][1000 genomes]
rs4859060	0.82[EUR][1000 genomes]
rs6419886	0.82[EUR][1000 genomes]
rs6419887	0.82[EUR][1000 genomes]
rs6419888	0.82[EUR][1000 genomes]
rs6551477	0.82[EUR][1000 genomes]
rs6774777	0.82[EUR][1000 genomes]
rs6791881	0.82[EUR][1000 genomes]
rs6794181	0.82[EUR][1000 genomes]
rs7635070	0.82[EUR][1000 genomes]
rs7644095	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9713450	0.84[ASN][1000 genomes]
rs9869786	0.80[EUR][1000 genomes]
rs9881446	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86960200-86963200	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links