Variant report

Variant	rs7644095
Chromosome Location	chr3:86936450-86936451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12497862	0.90[EUR][1000 genomes]
rs13064692	0.90[EUR][1000 genomes]
rs13070989	0.82[EUR][1000 genomes]
rs13074417	0.82[EUR][1000 genomes]
rs13082048	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13088306	0.90[EUR][1000 genomes]
rs13093618	0.82[EUR][1000 genomes]
rs13097914	0.94[EUR][1000 genomes]
rs34506181	0.81[EUR][1000 genomes]
rs4859048	0.87[EUR][1000 genomes]
rs4859060	0.85[EUR][1000 genomes]
rs6419886	0.85[EUR][1000 genomes]
rs6419887	0.85[EUR][1000 genomes]
rs6419888	0.85[EUR][1000 genomes]
rs6551383	0.90[EUR][1000 genomes]
rs6551384	0.81[EUR][1000 genomes]
rs6551477	0.85[EUR][1000 genomes]
rs6551494	0.82[EUR][1000 genomes]
rs6774777	0.86[EUR][1000 genomes]
rs67915858	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6791881	0.85[EUR][1000 genomes]
rs6794181	0.86[EUR][1000 genomes]
rs7426518	0.82[EUR][1000 genomes]
rs7427084	0.82[EUR][1000 genomes]
rs7427577	0.82[EUR][1000 genomes]
rs7428262	0.82[EUR][1000 genomes]
rs7430324	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7433355	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7623510	0.90[EUR][1000 genomes]
rs7630422	0.90[EUR][1000 genomes]
rs7633281	0.81[EUR][1000 genomes]
rs7635070	0.85[EUR][1000 genomes]
rs7638201	0.82[EUR][1000 genomes]
rs7642134	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7643213	0.90[EUR][1000 genomes]
rs7643326	0.88[EUR][1000 genomes]
rs7652100	0.80[EUR][1000 genomes]
rs9681197	0.82[EUR][1000 genomes]
rs9713182	0.82[EUR][1000 genomes]
rs9713450	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9713459	0.82[EUR][1000 genomes]
rs9756085	0.82[EUR][1000 genomes]
rs9756114	0.82[EUR][1000 genomes]
rs9809980	0.90[EUR][1000 genomes]
rs9828863	0.90[EUR][1000 genomes]
rs9831416	0.82[EUR][1000 genomes]
rs9831548	0.82[EUR][1000 genomes]
rs9833690	0.90[EUR][1000 genomes]
rs9842925	0.82[EUR][1000 genomes]
rs9845020	0.90[EUR][1000 genomes]
rs9847167	0.90[EUR][1000 genomes]
rs9864034	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9868090	0.82[EUR][1000 genomes]
rs9868316	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9869007	0.82[EUR][1000 genomes]
rs9869433	0.82[EUR][1000 genomes]
rs9869786	0.86[EUR][1000 genomes]
rs9871001	0.81[EUR][1000 genomes]
rs9881446	0.86[EUR][1000 genomes]
rs9882146	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv877128	chr3:86845934-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
9	nsv877130	chr3:86875458-86952516	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv877131	chr3:86875458-86961118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
11	nsv963525	chr3:86920310-86948539	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86919800-86938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:86927800-86939000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:86928400-86937200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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