Variant report

Variant	rs13097914
Chromosome Location	chr3:86955074-86955075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VGLL3-1	chr3:86954826-86955300	NONHSAT090681
2	lnc-VGLL3-1	chr3:86954827-86955300	XLOC_003177

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12496631	0.81[EUR][1000 genomes]
rs12497862	0.87[EUR][1000 genomes]
rs13064692	0.87[EUR][1000 genomes]
rs13074417	0.85[EUR][1000 genomes]
rs13082048	0.92[EUR][1000 genomes]
rs13088306	0.86[EUR][1000 genomes]
rs1347611	0.81[EUR][1000 genomes]
rs1370032	0.81[EUR][1000 genomes]
rs34506181	0.84[EUR][1000 genomes]
rs4859048	0.90[EUR][1000 genomes]
rs4859060	0.91[EUR][1000 genomes]
rs6419886	0.91[EUR][1000 genomes]
rs6419887	0.91[EUR][1000 genomes]
rs6419888	0.91[EUR][1000 genomes]
rs6551383	0.86[EUR][1000 genomes]
rs6551477	0.91[EUR][1000 genomes]
rs6774777	0.91[EUR][1000 genomes]
rs6781697	0.83[EUR][1000 genomes]
rs67915858	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6791881	0.91[EUR][1000 genomes]
rs6794181	0.91[EUR][1000 genomes]
rs6803815	0.83[EUR][1000 genomes]
rs7430324	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7433355	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7623510	0.87[EUR][1000 genomes]
rs7623702	0.82[EUR][1000 genomes]
rs7630422	0.87[EUR][1000 genomes]
rs7635070	0.91[EUR][1000 genomes]
rs7642134	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7643213	0.87[EUR][1000 genomes]
rs7643326	0.84[EUR][1000 genomes]
rs7644095	0.94[EUR][1000 genomes]
rs9713450	0.87[EUR][1000 genomes]
rs9809980	0.87[EUR][1000 genomes]
rs9828863	0.86[EUR][1000 genomes]
rs9833690	0.87[EUR][1000 genomes]
rs9845020	0.87[EUR][1000 genomes]
rs9847167	0.87[EUR][1000 genomes]
rs9864034	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9868316	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9869786	0.90[EUR][1000 genomes]
rs9871001	0.84[EUR][1000 genomes]
rs9881446	0.91[EUR][1000 genomes]
rs9882146	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv877131	chr3:86875458-86961118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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