Variant report

Variant	rs9310028
Chromosome Location	chr3:86880672-86880673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs11127959	0.82[AFR][1000 genomes]
rs11127961	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11127962	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11714652	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12485477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489293	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12489298	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12489313	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12497862	0.92[ASN][1000 genomes]
rs12714670	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064692	0.92[ASN][1000 genomes]
rs13066960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070989	0.92[ASN][1000 genomes]
rs13074432	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs13087636	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087787	0.86[YRI][hapmap]
rs13088306	0.88[ASN][1000 genomes]
rs13093052	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13093618	0.92[ASN][1000 genomes]
rs1437047	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1583578	0.81[EUR][1000 genomes]
rs2043685	0.80[EUR][1000 genomes]
rs2118188	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2118189	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2118191	0.81[EUR][1000 genomes]
rs2118192	0.80[EUR][1000 genomes]
rs2324795	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs28553515	0.81[EUR][1000 genomes]
rs28894812	0.81[EUR][1000 genomes]
rs36015800	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4425259	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4859048	0.89[ASN][1000 genomes]
rs4859060	0.87[ASN][1000 genomes]
rs4859107	0.82[YRI][hapmap]
rs6419886	0.87[ASN][1000 genomes]
rs6419887	0.87[ASN][1000 genomes]
rs6419888	0.87[ASN][1000 genomes]
rs6551383	0.91[ASN][1000 genomes]
rs6551384	0.92[ASN][1000 genomes]
rs6551477	0.87[ASN][1000 genomes]
rs6551494	0.92[ASN][1000 genomes]
rs6774777	0.87[ASN][1000 genomes]
rs6782806	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6791881	0.87[ASN][1000 genomes]
rs6794181	0.87[ASN][1000 genomes]
rs6807530	0.87[AFR][1000 genomes]
rs73137985	0.82[EUR][1000 genomes]
rs73139914	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73139922	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73139923	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7426518	0.92[ASN][1000 genomes]
rs7427084	0.92[ASN][1000 genomes]
rs7427577	0.92[ASN][1000 genomes]
rs7428262	0.92[ASN][1000 genomes]
rs7623510	0.92[ASN][1000 genomes]
rs7630422	0.92[ASN][1000 genomes]
rs7630849	0.80[EUR][1000 genomes]
rs7633281	0.92[ASN][1000 genomes]
rs7635070	0.87[ASN][1000 genomes]
rs7638201	0.92[ASN][1000 genomes]
rs7643213	0.92[ASN][1000 genomes]
rs7643326	0.92[ASN][1000 genomes]
rs7652100	0.87[ASN][1000 genomes]
rs9284805	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9284807	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284808	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9284809	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310025	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310026	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9310027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310029	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310030	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310032	0.85[EUR][1000 genomes]
rs9310033	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310034	0.87[EUR][1000 genomes]
rs9310035	0.82[AMR][1000 genomes]
rs9310036	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310037	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310038	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310039	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9631517	0.87[AFR][1000 genomes]
rs9681197	0.92[ASN][1000 genomes]
rs9681954	0.87[EUR][1000 genomes]
rs9682104	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9682583	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682971	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683172	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683187	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683191	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683301	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683310	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9713014	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9713018	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9713182	0.92[ASN][1000 genomes]
rs9713389	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9713410	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9713421	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9713432	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9713459	0.92[ASN][1000 genomes]
rs9713574	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9713693	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9713794	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9756085	0.92[ASN][1000 genomes]
rs9756114	0.89[ASN][1000 genomes]
rs9756702	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757252	0.88[EUR][1000 genomes]
rs9757447	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757801	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9759006	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9759053	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9799281	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9809980	0.92[ASN][1000 genomes]
rs9812688	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9815344	0.83[AFR][1000 genomes]
rs9826119	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828863	0.92[ASN][1000 genomes]
rs9830910	0.89[EUR][1000 genomes]
rs9830914	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9831416	0.92[ASN][1000 genomes]
rs9831548	0.92[ASN][1000 genomes]
rs9833108	0.80[AFR][1000 genomes]
rs9833690	0.92[ASN][1000 genomes]
rs9836383	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9842925	0.92[ASN][1000 genomes]
rs9844776	0.80[EUR][1000 genomes]
rs9845020	0.92[ASN][1000 genomes]
rs9847167	0.92[ASN][1000 genomes]
rs9856526	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9858833	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9864625	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9868090	0.92[ASN][1000 genomes]
rs9868576	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9869007	0.92[ASN][1000 genomes]
rs9869433	0.91[ASN][1000 genomes]
rs9869786	0.87[ASN][1000 genomes]
rs9881446	0.87[ASN][1000 genomes]
rs9881535	0.81[EUR][1000 genomes]
rs9882146	0.92[ASN][1000 genomes]
rs9882953	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1008177	chr3:86841615-86905761	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
14	nsv877128	chr3:86845934-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
15	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
16	nsv877130	chr3:86875458-86952516	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv877131	chr3:86875458-86961118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86878400-86881800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:86878600-86881400	Weak transcription	Ovary	ovary
3	chr3:86879200-86881600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:86879600-86880800	Enhancers	Osteobl	bone
5	chr3:86879600-86881200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:86879600-86881800	Enhancers	Fetal Lung	lung

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