Variant report

Variant	rs13087787
Chromosome Location	chr3:87001049-87001050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1025631	0.83[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13074432	0.95[YRI][hapmap]
rs13092192	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1836918	0.81[TSI][hapmap]
rs1898269	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1898270	0.94[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs1960268	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2043663	0.83[CEU][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap]
rs2575775	0.83[TSI][hapmap]
rs2660777	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4859107	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86986800-87014400	Weak transcription	Aorta	Aorta
2	chr3:86987400-87007400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:86988200-87007600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:86988200-87013400	Weak transcription	Ovary	ovary
5	chr3:86993800-87014200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:86994000-87013200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:86994800-87010400	Weak transcription	Fetal Lung	lung
8	chr3:86996000-87005600	Genic enhancers	Osteobl	bone
9	chr3:86996600-87002200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:86997000-87005000	Enhancers	Hela-S3	cervix
11	chr3:86997200-87001800	Enhancers	HMEC	breast
12	chr3:86997200-87003800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:86997400-87001800	Enhancers	NHLF	lung
14	chr3:86997600-87013200	Genic enhancers	NHDF-Ad	bronchial
15	chr3:86997800-87001200	Genic enhancers	HSMM	muscle
16	chr3:86998000-87019800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:86998400-87001200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:86998600-87003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:86998600-87003400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:86998600-87007600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:86998800-87007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
23	chr3:86999800-87002200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:86999800-87002200	Enhancers	A549	lung
25	chr3:87000200-87004000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:87000400-87001200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:87000400-87001200	Enhancers	NH-A	brain
28	chr3:87000400-87001400	Enhancers	Adipose Nuclei	Adipose
29	chr3:87000400-87002200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr3:87000600-87001200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:87000600-87001200	Genic enhancers	Placenta	Placenta
32	chr3:87000600-87001400	Genic enhancers	HSMMtube	muscle
33	chr3:87000800-87001200	Enhancers	Placenta Amnion	Placenta Amnion
34	chr3:87000800-87006200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:87000800-87007200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:87001000-87001200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr3:87001000-87002000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:87001000-87003200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:87001000-87003400	Weak transcription	Fetal Muscle Leg	muscle

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