Variant report

Variant	rs13074432
Chromosome Location	chr3:86989334-86989335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13087787	0.95[YRI][hapmap]
rs13324964	0.96[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13356	0.96[CEU][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1370035	0.85[AFR][1000 genomes]
rs1370038	0.84[AFR][1000 genomes]
rs1436639	0.96[CEU][hapmap];0.87[GIH][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1436640	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1473273	0.85[AFR][1000 genomes]
rs2340475	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4859107	0.91[YRI][hapmap]
rs6784619	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6789975	0.92[CEU][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9834197	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86980600-86995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:86986000-86998200	Weak transcription	A549	lung
3	chr3:86986800-87014400	Weak transcription	Aorta	Aorta
4	chr3:86987200-86990800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:86987200-86997800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:86987400-87007400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:86987800-86996600	Strong transcription	Placenta	Placenta
8	chr3:86987800-86999600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:86988000-86989400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:86988000-86992800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:86988000-86993600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:86988200-86989400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:86988200-86993200	Weak transcription	Fetal Lung	lung
14	chr3:86988200-87007600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:86988200-87013400	Weak transcription	Ovary	ovary
16	chr3:86988400-86989400	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr3:86988400-86991200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:86988600-86990800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:86988600-86993400	Weak transcription	HSMMtube	muscle
20	chr3:86988600-87000000	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:86988800-86993000	Weak transcription	NHLF	lung
22	chr3:86989000-86989600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:86989000-86993200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:86989000-86993400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr3:86989000-86997800	Strong transcription	HSMM	muscle
26	chr3:86989200-86989400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr3:86989200-86989600	Strong transcription	NH-A	brain
28	chr3:86989200-86990800	Strong transcription	NHDF-Ad	bronchial
29	chr3:86989200-86991000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:86989200-86993200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:86989200-86996000	Strong transcription	Osteobl	bone
32	chr3:86989200-86997400	Weak transcription	Adipose Nuclei	Adipose
33	chr3:86989200-86999600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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