Variant report

Variant	rs4859107
Chromosome Location	chr3:87015150-87015151
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1025631	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13074432	0.91[YRI][hapmap]
rs13087787	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13092192	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1898269	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1898270	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs1960268	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2043663	0.83[CEU][hapmap]
rs2660777	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86998000-87019800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
3	chr3:87007200-87026600	Weak transcription	Esophagus	oesophagus
4	chr3:87007200-87038400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:87008000-87016200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:87008000-87016600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:87008000-87022600	Weak transcription	HMEC	breast
8	chr3:87008000-87028800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:87008000-87032000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:87008000-87034200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:87008200-87016200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:87008200-87022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:87009800-87016400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:87010800-87016800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:87010800-87020000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:87011000-87016200	Weak transcription	A549	lung
17	chr3:87011400-87015600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:87011400-87015800	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr3:87011600-87016600	Strong transcription	HSMM	muscle
20	chr3:87011600-87017800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:87011600-87022600	Weak transcription	HUVEC	blood vessel
22	chr3:87011600-87026600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:87012400-87017600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:87012400-87018000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:87012600-87016200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:87012600-87016200	Strong transcription	HSMMtube	muscle
27	chr3:87012600-87032600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:87012800-87016000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:87012800-87022200	Strong transcription	NH-A	brain
30	chr3:87013000-87020800	Strong transcription	NHLF	lung
31	chr3:87013200-87016600	Strong transcription	Fetal Lung	lung
32	chr3:87013200-87019200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr3:87013400-87016200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:87013400-87016200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:87013400-87016800	Strong transcription	Ovary	ovary
36	chr3:87014000-87021200	Genic enhancers	Placenta	Placenta
37	chr3:87014200-87015600	Strong transcription	Adipose Nuclei	Adipose
38	chr3:87014200-87016200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:87014200-87016200	Strong transcription	Fetal Muscle Leg	muscle
40	chr3:87014200-87016400	Strong transcription	Colon Smooth Muscle	Colon
41	chr3:87014400-87015200	Strong transcription	Aorta	Aorta
42	chr3:87014400-87015400	Strong transcription	Hela-S3	cervix
43	chr3:87014400-87016600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:87014400-87019800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:87014600-87018800	Genic enhancers	NHDF-Ad	bronchial
46	chr3:87014600-87019000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:87014800-87018600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:87015000-87015600	Weak transcription	Fetal Intestine Large	intestine
49	chr3:87015000-87016200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:87015000-87016200	Weak transcription	Fetal Intestine Small	intestine

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