Variant report

Variant	rs13092192
Chromosome Location	chr3:87001321-87001322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13087787	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1836918	0.84[CEU][hapmap]
rs1898269	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1898270	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1960268	0.83[EUR][1000 genomes]
rs2660777	0.82[CEU][hapmap]
rs4859107	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86986800-87014400	Weak transcription	Aorta	Aorta
2	chr3:86987400-87007400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:86988200-87007600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:86988200-87013400	Weak transcription	Ovary	ovary
5	chr3:86993800-87014200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:86994000-87013200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:86994800-87010400	Weak transcription	Fetal Lung	lung
8	chr3:86996000-87005600	Genic enhancers	Osteobl	bone
9	chr3:86996600-87002200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:86997000-87005000	Enhancers	Hela-S3	cervix
11	chr3:86997200-87001800	Enhancers	HMEC	breast
12	chr3:86997200-87003800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:86997400-87001800	Enhancers	NHLF	lung
14	chr3:86997600-87013200	Genic enhancers	NHDF-Ad	bronchial
15	chr3:86998000-87019800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:86998600-87003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:86998600-87003400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:86998600-87007600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:86998800-87007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
21	chr3:86999800-87002200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:86999800-87002200	Enhancers	A549	lung
23	chr3:87000200-87004000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:87000400-87001400	Enhancers	Adipose Nuclei	Adipose
25	chr3:87000400-87002200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:87000600-87001400	Genic enhancers	HSMMtube	muscle
27	chr3:87000800-87006200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:87000800-87007200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:87001000-87002000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:87001000-87003200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:87001000-87003400	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:87001200-87001400	Weak transcription	Placenta	Placenta
33	chr3:87001200-87002000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:87001200-87003200	Strong transcription	HSMM	muscle
35	chr3:87001200-87003400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:87001200-87003400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:87001200-87003400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:87001200-87003600	Weak transcription	NH-A	brain
39	chr3:87001200-87006600	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links