Variant report

Variant	rs9757252
Chromosome Location	chr3:86894478-86894479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11127961	0.92[EUR][1000 genomes]
rs11127962	0.92[EUR][1000 genomes]
rs11718876	0.80[EUR][1000 genomes]
rs11718877	0.80[EUR][1000 genomes]
rs12485477	0.88[EUR][1000 genomes]
rs12487818	0.81[EUR][1000 genomes]
rs12488464	0.88[EUR][1000 genomes]
rs12637947	0.81[EUR][1000 genomes]
rs12714670	0.92[EUR][1000 genomes]
rs13066960	0.88[EUR][1000 genomes]
rs13087636	0.90[EUR][1000 genomes]
rs13093052	0.85[EUR][1000 genomes]
rs1437048	0.81[EUR][1000 genomes]
rs2118190	0.81[EUR][1000 genomes]
rs59662471	0.80[EUR][1000 genomes]
rs728179	0.80[EUR][1000 genomes]
rs7430324	0.83[ASN][1000 genomes]
rs7433355	0.83[ASN][1000 genomes]
rs7642134	0.83[ASN][1000 genomes]
rs9284805	0.89[EUR][1000 genomes]
rs9284807	0.92[EUR][1000 genomes]
rs9284808	0.86[EUR][1000 genomes]
rs9284809	0.92[EUR][1000 genomes]
rs9310025	0.88[EUR][1000 genomes]
rs9310026	0.87[EUR][1000 genomes]
rs9310027	0.87[EUR][1000 genomes]
rs9310028	0.88[EUR][1000 genomes]
rs9310029	0.87[EUR][1000 genomes]
rs9310030	0.90[EUR][1000 genomes]
rs9310032	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9310033	0.92[EUR][1000 genomes]
rs9310034	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9310036	0.92[EUR][1000 genomes]
rs9310037	0.92[EUR][1000 genomes]
rs9310038	0.92[EUR][1000 genomes]
rs9310039	0.92[EUR][1000 genomes]
rs9681954	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9682104	0.89[EUR][1000 genomes]
rs9682583	0.92[EUR][1000 genomes]
rs9682971	0.90[EUR][1000 genomes]
rs9683172	0.91[EUR][1000 genomes]
rs9683187	0.91[EUR][1000 genomes]
rs9683191	0.92[EUR][1000 genomes]
rs9683301	0.88[EUR][1000 genomes]
rs9683310	0.88[EUR][1000 genomes]
rs9713014	0.92[EUR][1000 genomes]
rs9713018	0.92[EUR][1000 genomes]
rs9713389	0.92[EUR][1000 genomes]
rs9713410	0.92[EUR][1000 genomes]
rs9713421	0.92[EUR][1000 genomes]
rs9713432	0.92[EUR][1000 genomes]
rs9713574	0.89[EUR][1000 genomes]
rs9713693	0.92[EUR][1000 genomes]
rs9713794	0.91[EUR][1000 genomes]
rs9756702	0.92[EUR][1000 genomes]
rs9757447	0.87[EUR][1000 genomes]
rs9757801	0.92[EUR][1000 genomes]
rs9759006	0.92[EUR][1000 genomes]
rs9759053	0.92[EUR][1000 genomes]
rs9799281	0.89[EUR][1000 genomes]
rs9812688	0.80[EUR][1000 genomes]
rs9816006	0.81[EUR][1000 genomes]
rs9819570	0.81[EUR][1000 genomes]
rs9819897	0.81[EUR][1000 genomes]
rs9826119	0.90[EUR][1000 genomes]
rs9830910	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9830914	0.89[EUR][1000 genomes]
rs9836383	0.85[EUR][1000 genomes]
rs9850281	0.80[EUR][1000 genomes]
rs9856526	0.89[EUR][1000 genomes]
rs9858833	0.96[EUR][1000 genomes]
rs9864034	0.83[ASN][1000 genomes]
rs9868316	0.83[ASN][1000 genomes]
rs9868576	0.89[EUR][1000 genomes]
rs9882953	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1008177	chr3:86841615-86905761	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
14	nsv877128	chr3:86845934-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
15	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
16	nsv877130	chr3:86875458-86952516	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv877131	chr3:86875458-86961118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Prostate cancer (gene x gene interaction)	22219177	GWAS catalog

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86888200-86899600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:86894200-86894800	Active TSS	NHDF-Ad	bronchial
3	chr3:86894400-86895000	Active TSS	Fetal Lung	lung

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