Variant report

Variant	rs67782618
Chromosome Location	chr3:136548919-136548920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10935199	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486911	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1609391	0.90[EUR][1000 genomes]
rs17366234	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28458819	0.84[EUR][1000 genomes]
rs28877307	0.82[EUR][1000 genomes]
rs34799319	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4420814	0.82[EUR][1000 genomes]
rs4678441	0.86[EUR][1000 genomes]
rs4678442	0.86[EUR][1000 genomes]
rs56163507	0.81[EUR][1000 genomes]
rs56695781	0.82[EUR][1000 genomes]
rs60574021	0.84[EUR][1000 genomes]
rs6793936	0.82[EUR][1000 genomes]
rs6802291	0.84[EUR][1000 genomes]
rs7621932	0.82[EUR][1000 genomes]
rs7633629	0.82[EUR][1000 genomes]
rs9757179	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877530	chr3:136514310-136604697	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
2	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136539800-136553600	Weak transcription	Hela-S3	cervix
2	chr3:136540800-136555200	Weak transcription	Dnd41	blood
3	chr3:136544000-136553400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:136544000-136554600	Weak transcription	Psoas Muscle	Psoas
5	chr3:136548400-136554600	Weak transcription	Osteobl	bone
6	chr3:136548600-136550000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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