Variant report
Variant | rs28877307 |
---|---|
Chromosome Location | chr3:136515677-136515678 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10470440 | 0.87[ASN][1000 genomes] |
rs1052618 | 0.84[ASN][1000 genomes] |
rs10935193 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10935198 | 0.87[ASN][1000 genomes] |
rs11713817 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs11713867 | 0.88[AMR][1000 genomes] |
rs11924477 | 0.87[ASN][1000 genomes] |
rs12330283 | 0.81[ASN][1000 genomes] |
rs12486911 | 0.81[EUR][1000 genomes] |
rs12488365 | 0.81[ASN][1000 genomes] |
rs12497379 | 0.81[ASN][1000 genomes] |
rs12630955 | 0.81[ASN][1000 genomes] |
rs12637949 | 0.81[ASN][1000 genomes] |
rs12695653 | 0.87[ASN][1000 genomes] |
rs1347209 | 0.81[ASN][1000 genomes] |
rs1406540 | 0.87[ASN][1000 genomes] |
rs1406541 | 0.87[ASN][1000 genomes] |
rs1533445 | 0.92[ASN][1000 genomes] |
rs1569228 | 0.87[ASN][1000 genomes] |
rs1569229 | 0.87[ASN][1000 genomes] |
rs17366234 | 0.80[EUR][1000 genomes] |
rs1805300 | 0.84[ASN][1000 genomes] |
rs1819095 | 0.81[ASN][1000 genomes] |
rs1865149 | 0.81[ASN][1000 genomes] |
rs1914048 | 0.87[ASN][1000 genomes] |
rs2031029 | 0.81[ASN][1000 genomes] |
rs2031030 | 0.84[ASN][1000 genomes] |
rs2031031 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs2060303 | 0.84[ASN][1000 genomes] |
rs2117009 | 0.81[ASN][1000 genomes] |
rs2117010 | 0.81[ASN][1000 genomes] |
rs2138540 | 0.81[ASN][1000 genomes] |
rs2271684 | 0.87[ASN][1000 genomes] |
rs2343663 | 0.81[ASN][1000 genomes] |
rs28458819 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs28671336 | 0.92[ASN][1000 genomes] |
rs35339486 | 0.81[ASN][1000 genomes] |
rs4038076 | 0.84[ASN][1000 genomes] |
rs4420814 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4533585 | 0.87[ASN][1000 genomes] |
rs4600775 | 0.91[ASN][1000 genomes] |
rs4678272 | 0.81[ASN][1000 genomes] |
rs4678273 | 0.81[ASN][1000 genomes] |
rs4678274 | 0.81[ASN][1000 genomes] |
rs4678441 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4678442 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4678443 | 0.87[ASN][1000 genomes] |
rs4678444 | 0.87[ASN][1000 genomes] |
rs4678445 | 0.84[ASN][1000 genomes] |
rs4678448 | 0.84[ASN][1000 genomes] |
rs4678450 | 0.81[ASN][1000 genomes] |
rs4678451 | 0.81[ASN][1000 genomes] |
rs4678452 | 0.81[ASN][1000 genomes] |
rs56163507 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs56695781 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs60574021 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6439663 | 0.87[ASN][1000 genomes] |
rs6439664 | 0.87[ASN][1000 genomes] |
rs6439667 | 0.87[ASN][1000 genomes] |
rs6439671 | 0.84[ASN][1000 genomes] |
rs6439672 | 0.84[ASN][1000 genomes] |
rs6439673 | 0.81[ASN][1000 genomes] |
rs6439675 | 0.81[ASN][1000 genomes] |
rs6761993 | 0.81[ASN][1000 genomes] |
rs6766755 | 0.85[ASN][1000 genomes] |
rs6773117 | 0.87[ASN][1000 genomes] |
rs6777816 | 0.84[ASN][1000 genomes] |
rs67782618 | 0.82[EUR][1000 genomes] |
rs6783508 | 0.80[ASN][1000 genomes] |
rs6784005 | 0.81[ASN][1000 genomes] |
rs6786648 | 0.81[ASN][1000 genomes] |
rs6793936 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6797509 | 0.82[ASN][1000 genomes] |
rs6800032 | 0.81[ASN][1000 genomes] |
rs6800690 | 0.81[ASN][1000 genomes] |
rs6802291 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6803618 | 0.81[ASN][1000 genomes] |
rs6809943 | 0.83[ASN][1000 genomes] |
rs7434143 | 0.81[ASN][1000 genomes] |
rs7614422 | 0.87[ASN][1000 genomes] |
rs7621932 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7627443 | 0.84[ASN][1000 genomes] |
rs7629882 | 0.81[ASN][1000 genomes] |
rs7630571 | 0.87[ASN][1000 genomes] |
rs7633629 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7639692 | 0.93[ASN][1000 genomes] |
rs7645773 | 0.81[ASN][1000 genomes] |
rs7647451 | 0.82[ASN][1000 genomes] |
rs7651085 | 0.81[ASN][1000 genomes] |
rs9289518 | 0.82[ASN][1000 genomes] |
rs9289519 | 0.82[ASN][1000 genomes] |
rs9289520 | 0.84[ASN][1000 genomes] |
rs9289523 | 0.81[ASN][1000 genomes] |
rs938524 | 0.92[ASN][1000 genomes] |
rs938525 | 0.84[ASN][1000 genomes] |
rs9682106 | 0.85[ASN][1000 genomes] |
rs9757179 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs9811169 | 0.81[ASN][1000 genomes] |
rs9815771 | 0.81[ASN][1000 genomes] |
rs9817453 | 0.84[ASN][1000 genomes] |
rs9817967 | 0.81[ASN][1000 genomes] |
rs9818397 | 0.87[ASN][1000 genomes] |
rs9818792 | 0.81[ASN][1000 genomes] |
rs9819572 | 0.87[ASN][1000 genomes] |
rs9819743 | 0.87[ASN][1000 genomes] |
rs9821557 | 0.87[ASN][1000 genomes] |
rs9823565 | 0.87[ASN][1000 genomes] |
rs9827648 | 0.84[ASN][1000 genomes] |
rs9828009 | 0.81[ASN][1000 genomes] |
rs9832045 | 0.87[ASN][1000 genomes] |
rs9834250 | 0.87[ASN][1000 genomes] |
rs9834438 | 0.82[ASN][1000 genomes] |
rs9834861 | 0.81[ASN][1000 genomes] |
rs9835096 | 0.87[ASN][1000 genomes] |
rs9836807 | 0.84[ASN][1000 genomes] |
rs9837990 | 0.81[ASN][1000 genomes] |
rs9838022 | 0.81[ASN][1000 genomes] |
rs9842436 | 0.81[ASN][1000 genomes] |
rs9842577 | 0.87[ASN][1000 genomes] |
rs9843352 | 0.87[ASN][1000 genomes] |
rs9843733 | 0.81[ASN][1000 genomes] |
rs9846334 | 0.81[ASN][1000 genomes] |
rs9846691 | 0.81[ASN][1000 genomes] |
rs9847548 | 0.87[ASN][1000 genomes] |
rs9848867 | 0.81[ASN][1000 genomes] |
rs9849767 | 0.87[ASN][1000 genomes] |
rs9853417 | 0.81[ASN][1000 genomes] |
rs9855314 | 0.81[ASN][1000 genomes] |
rs9856828 | 0.81[ASN][1000 genomes] |
rs9859665 | 0.81[ASN][1000 genomes] |
rs9859810 | 0.81[ASN][1000 genomes] |
rs9860774 | 0.87[ASN][1000 genomes] |
rs9864926 | 0.87[ASN][1000 genomes] |
rs9865545 | 0.84[ASN][1000 genomes] |
rs9870377 | 0.83[ASN][1000 genomes] |
rs9871987 | 0.82[ASN][1000 genomes] |
rs9874887 | 0.81[ASN][1000 genomes] |
rs9878031 | 0.93[ASN][1000 genomes] |
rs9878117 | 0.81[ASN][1000 genomes] |
rs9878367 | 0.81[ASN][1000 genomes] |
rs9878464 | 0.81[ASN][1000 genomes] |
rs9880708 | 0.81[ASN][1000 genomes] |
rs9881139 | 0.81[ASN][1000 genomes] |
rs9883131 | 0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1006737 | chr3:136466188-136530743 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
2 | nsv877530 | chr3:136514310-136604697 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | n/a |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:136506400-136521000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
2 | chr3:136506600-136521000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr3:136506600-136521200 | Weak transcription | Hela-S3 | cervix |
4 | chr3:136513000-136520400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
5 | chr3:136513800-136517200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
6 | chr3:136513800-136521400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
7 | chr3:136513800-136521600 | Weak transcription | Primary hematopoietic stem cells | blood |
8 | chr3:136514400-136520800 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
9 | chr3:136514600-136520200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
10 | chr3:136515200-136517400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |