Variant report

Variant	rs28671336
Chromosome Location	chr3:136514142-136514143
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136502917..136505188-chr3:136511396..136514165,2	MCF-7	breast:

Extended variants
information (count: 191 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs10470440	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1052618	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935198	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935210	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11924477	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12330283	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487901	0.82[EUR][1000 genomes]
rs12488365	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12491278	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12491729	0.83[EUR][1000 genomes]
rs12491730	0.83[EUR][1000 genomes]
rs12497379	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12630955	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12633003	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12637949	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12695653	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13315318	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1344790	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1347209	0.86[ASN][1000 genomes]
rs1400261	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1406540	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1406541	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1433318	0.81[ASN][1000 genomes]
rs1433319	0.81[ASN][1000 genomes]
rs1533445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569228	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1569229	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805300	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1819095	0.86[ASN][1000 genomes]
rs1865149	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1914048	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1965108	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1965109	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1971788	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2031029	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031030	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2060303	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2117009	0.86[ASN][1000 genomes]
rs2117010	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2138540	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2138541	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2271684	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2343662	0.80[EUR][1000 genomes]
rs2343663	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28458819	0.96[ASN][1000 genomes]
rs28564581	0.81[EUR][1000 genomes]
rs28672119	0.85[EUR][1000 genomes]
rs28761333	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2880767	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28877307	0.92[ASN][1000 genomes]
rs35339486	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35760633	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3772387	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3772388	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3845925	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3856623	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3915455	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3963921	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4038076	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4038077	0.83[EUR][1000 genomes]
rs4420814	0.99[ASN][1000 genomes]
rs4533585	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4600775	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4678272	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678273	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678274	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678276	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4678441	0.90[ASN][1000 genomes]
rs4678442	0.90[ASN][1000 genomes]
rs4678443	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4678444	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4678445	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678448	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678450	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678451	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678452	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56163507	0.94[ASN][1000 genomes]
rs56695781	0.93[ASN][1000 genomes]
rs60574021	0.96[ASN][1000 genomes]
rs6439663	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439664	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439667	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439670	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6439671	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439672	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439673	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6439675	0.86[ASN][1000 genomes]
rs6761993	0.86[ASN][1000 genomes]
rs6766755	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6771717	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6773117	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6775389	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6777816	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6777873	0.81[EUR][1000 genomes]
rs6783508	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6783999	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6784005	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6786302	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6786648	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6793936	0.99[ASN][1000 genomes]
rs6793966	0.83[AMR][1000 genomes]
rs6797509	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6800032	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6800690	0.86[ASN][1000 genomes]
rs6802291	0.89[ASN][1000 genomes]
rs6803618	0.86[ASN][1000 genomes]
rs6809943	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7431100	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7434143	0.86[ASN][1000 genomes]
rs7611847	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7614422	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7617932	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7621932	0.97[ASN][1000 genomes]
rs7627443	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7629882	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7630571	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7631017	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7633629	0.97[ASN][1000 genomes]
rs7639692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7645773	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7647451	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7648817	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7649211	0.82[EUR][1000 genomes]
rs7651085	0.86[ASN][1000 genomes]
rs7651644	0.81[EUR][1000 genomes]
rs856662	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9289518	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9289519	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9289520	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289523	0.86[ASN][1000 genomes]
rs938524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs938525	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9682106	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9682783	0.80[AFR][1000 genomes]
rs9811169	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9815771	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9817453	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9817967	0.86[ASN][1000 genomes]
rs9818397	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9818792	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9819572	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9819743	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9819804	0.83[EUR][1000 genomes]
rs9821557	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9823565	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9827648	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9828009	0.86[ASN][1000 genomes]
rs9832045	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9833952	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9834250	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9834438	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9834861	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9835096	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9836807	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9837990	0.86[ASN][1000 genomes]
rs9838022	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9841985	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9842145	0.84[ASN][1000 genomes]
rs9842436	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9842577	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843352	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843733	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9846334	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9846691	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9846754	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9847548	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9848867	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9849767	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9851726	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9853417	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9855314	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9856828	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9859665	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9859810	0.86[ASN][1000 genomes]
rs9860774	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9863551	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9864926	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9864941	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9865545	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870377	0.85[ASN][1000 genomes]
rs9871987	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9874887	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878031	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9878117	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878367	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878464	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9880708	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9881139	0.86[ASN][1000 genomes]
rs9883131	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9883979	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136506400-136521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:136506600-136521000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:136506600-136521200	Weak transcription	Hela-S3	cervix
4	chr3:136511200-136514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:136513000-136520400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:136513600-136514400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:136513800-136517200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:136513800-136521400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:136513800-136521600	Weak transcription	Primary hematopoietic stem cells	blood

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