Variant report

Variant	rs6803618
Chromosome Location	chr3:136623791-136623792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr3:136623596-136623872	K562	blood:	n/a	n/a
2	KAP1	chr3:136623410-136623827	K562	blood:	n/a	n/a
3	SETDB1	chr3:136622579-136623888	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136621285..136624241-chr3:136629189..136631419,2	K562	blood:

Variant related genes	Relation type
ENSG00000214283	TF binding region

Extended variants
information (count: 200 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs10470440	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1052618	0.88[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.97[ASN][1000 genomes]
rs10935198	0.94[ASN][1000 genomes]
rs10935210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11921170	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11924477	0.94[ASN][1000 genomes]
rs12330283	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12487901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12488365	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12491278	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12497379	0.88[ASN][1000 genomes]
rs12630955	1.00[ASN][1000 genomes]
rs12633003	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12637949	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12695653	0.94[ASN][1000 genomes]
rs13314932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13315318	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1344790	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1347209	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400261	0.83[ASN][1000 genomes]
rs1406540	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.94[ASN][1000 genomes]
rs1406541	0.88[CHB][hapmap];0.94[ASN][1000 genomes]
rs1433318	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1433319	0.94[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1533445	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs1569228	0.88[ASW][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs1569229	0.94[ASN][1000 genomes]
rs1805300	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1819095	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865149	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1914048	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.94[ASN][1000 genomes]
rs1965108	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1965109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1971788	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2031029	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2031030	0.97[ASN][1000 genomes]
rs2060303	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2117009	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2117010	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2138540	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2138541	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2271684	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2343662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2343663	1.00[ASN][1000 genomes]
rs28458819	0.88[ASN][1000 genomes]
rs28671336	0.86[ASN][1000 genomes]
rs28672119	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28761333	0.80[ASN][1000 genomes]
rs2880767	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28877307	0.81[ASN][1000 genomes]
rs35339486	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35760633	0.97[ASN][1000 genomes]
rs3772387	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3772388	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3845925	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3856623	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3915455	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3963921	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4038076	0.92[ASN][1000 genomes]
rs4420814	0.85[ASN][1000 genomes]
rs4533585	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs4594566	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4600775	0.85[ASN][1000 genomes]
rs4678272	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4678273	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4678274	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4678276	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4678441	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4678442	0.93[ASN][1000 genomes]
rs4678443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[ASN][1000 genomes]
rs4678444	0.94[ASN][1000 genomes]
rs4678445	0.92[ASN][1000 genomes]
rs4678448	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4678450	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4678451	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4678452	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56163507	0.84[ASN][1000 genomes]
rs56695781	0.80[ASN][1000 genomes]
rs60574021	0.88[ASN][1000 genomes]
rs6439663	0.94[ASW][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[YRI][hapmap];0.94[ASN][1000 genomes]
rs6439664	0.94[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs6439667	0.94[ASN][1000 genomes]
rs6439670	0.89[ASN][1000 genomes]
rs6439671	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6439672	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6439673	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6439675	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761993	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766755	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6771717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6773117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs6775389	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6777816	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6777873	0.81[ASN][1000 genomes]
rs6782716	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6783508	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6783999	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6784005	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6786302	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6786648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs6793936	0.85[ASN][1000 genomes]
rs6793966	0.80[ASN][1000 genomes]
rs6797509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs6800032	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6800690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802291	0.87[ASN][1000 genomes]
rs6809943	0.90[ASN][1000 genomes]
rs7431100	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7434143	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7611847	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7614422	0.94[ASN][1000 genomes]
rs7617932	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7621932	0.86[ASN][1000 genomes]
rs7627443	0.97[ASN][1000 genomes]
rs7629659	0.87[ASN][1000 genomes]
rs7629882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7630571	0.94[ASN][1000 genomes]
rs7631017	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7633629	0.86[ASN][1000 genomes]
rs7636956	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7639692	0.88[ASN][1000 genomes]
rs7645773	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7647451	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7648817	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7649211	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7651085	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651644	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs835636	0.85[CEU][hapmap];0.85[MKK][hapmap]
rs835637	0.89[MKK][hapmap]
rs835649	1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.88[MKK][hapmap];0.87[ASN][1000 genomes]
rs856662	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9289518	0.89[ASN][1000 genomes]
rs9289519	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9289520	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9289523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[ASN][1000 genomes]
rs938525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9682106	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs9811169	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9815771	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9817132	0.82[AFR][1000 genomes]
rs9817453	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9817967	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818397	0.88[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs9818792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9819572	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs9819743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[ASN][1000 genomes]
rs9819804	0.82[AFR][1000 genomes]
rs9821557	0.94[ASN][1000 genomes]
rs9823565	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9827648	0.94[ASW][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9828009	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832045	0.94[ASN][1000 genomes]
rs9833952	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9834250	0.94[ASN][1000 genomes]
rs9834438	0.89[ASN][1000 genomes]
rs9834861	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9835096	0.94[ASN][1000 genomes]
rs9836807	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9837990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838022	1.00[ASN][1000 genomes]
rs9841985	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9842145	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9842400	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9842436	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9842577	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs9843352	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9843733	1.00[ASN][1000 genomes]
rs9846334	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9846691	0.82[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9846754	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9847548	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9848867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9849767	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9851726	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9853417	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9855314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9856828	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9859665	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9859810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860774	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9863551	0.96[ASN][1000 genomes]
rs9864926	0.94[ASN][1000 genomes]
rs9864941	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9865545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9870377	0.99[ASN][1000 genomes]
rs9871987	0.85[ASN][1000 genomes]
rs9874887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9878031	0.88[ASN][1000 genomes]
rs9878117	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9878367	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9878464	0.82[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs9880708	0.88[ASN][1000 genomes]
rs9881139	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883108	0.85[AFR][1000 genomes]
rs9883131	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9883979	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6803618	SPSB4	cis	cerebellum	SCAN
rs6803618	TMEM22	cis	cerebellum	SCAN
rs6803618	NCK1	cis	parietal	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136609400-136625200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:136613200-136648800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:136613400-136625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:136613400-136626200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:136613600-136625200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:136613600-136625200	Weak transcription	Ovary	ovary
7	chr3:136613600-136625200	Weak transcription	Pancreas	Pancrea
8	chr3:136613600-136626200	Weak transcription	HMEC	breast
9	chr3:136613600-136633600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:136613600-136638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:136614000-136625200	Weak transcription	Gastric	stomach
12	chr3:136614000-136625200	Weak transcription	Spleen	Spleen
13	chr3:136618200-136625200	Weak transcription	Left Ventricle	heart
14	chr3:136618200-136625200	Weak transcription	Right Atrium	heart
15	chr3:136618600-136624800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:136618600-136627200	Weak transcription	Small Intestine	intestine
17	chr3:136618800-136624200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:136619200-136625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:136619200-136656800	Weak transcription	NHLF	lung
20	chr3:136619400-136624600	Weak transcription	Psoas Muscle	Psoas
21	chr3:136620800-136625600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:136621000-136628000	Weak transcription	Hela-S3	cervix
23	chr3:136621600-136625600	Weak transcription	K562	blood
24	chr3:136621600-136625800	Weak transcription	HUVEC	blood vessel
25	chr3:136621800-136625400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:136622000-136623800	ZNF genes & repeats	Dnd41	blood
27	chr3:136622000-136625200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr3:136622000-136625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:136622200-136624600	Weak transcription	Primary T cells from cord blood	blood
30	chr3:136622200-136625400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:136622200-136628000	Weak transcription	Liver	Liver
32	chr3:136622200-136633000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:136622400-136624200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:136622400-136624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:136622400-136626600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:136622600-136624200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
37	chr3:136622600-136624200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
38	chr3:136622800-136624200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr3:136623000-136623800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
40	chr3:136623000-136626200	Weak transcription	Fetal Kidney	kidney
41	chr3:136623200-136624000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:136623200-136624000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:136623200-136631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:136623600-136624000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr3:136623600-136624200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr3:136623600-136624800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:136623600-136625400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links