Variant report

Variant	rs1533445
Chromosome Location	chr3:136510266-136510267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136499197..136501261-chr3:136509704..136512204,2	K562	blood:
2	chr3:136470803..136472971-chr3:136508761..136512286,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261758	Chromatin interaction
ENSG00000118007	Chromatin interaction

Extended variants
information (count: 192 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs10470440	0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1052618	0.93[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935198	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935210	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11924477	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12330283	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487901	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs12488365	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12491278	0.83[ASN][1000 genomes]
rs12491729	0.82[EUR][1000 genomes]
rs12491730	0.82[EUR][1000 genomes]
rs12497379	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12630955	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12633003	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12637949	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12695653	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13314932	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs13315318	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1344790	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1347209	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs1400261	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1406540	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1406541	0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1433318	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs1433319	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs1569228	0.93[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1569229	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805300	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1819095	0.86[ASN][1000 genomes]
rs1865149	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1914048	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1965108	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1965109	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1971788	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2031029	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.80[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031030	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2060303	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2117009	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[ASN][1000 genomes]
rs2117010	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2138540	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2138541	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2271684	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2343662	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2343663	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28458819	0.96[ASN][1000 genomes]
rs28564581	0.80[EUR][1000 genomes]
rs28671336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28672119	0.84[EUR][1000 genomes]
rs28761333	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2880767	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28877307	0.92[ASN][1000 genomes]
rs35339486	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35760633	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3772387	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3772388	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3845925	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs3856623	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3915455	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3963921	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4038076	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4038077	0.82[EUR][1000 genomes]
rs4420814	0.99[ASN][1000 genomes]
rs4533585	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4600775	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4678272	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678273	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678274	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678276	0.81[ASN][1000 genomes]
rs4678441	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4678442	0.90[ASN][1000 genomes]
rs4678443	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4678444	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4678445	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678448	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678450	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678451	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678452	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56163507	0.94[ASN][1000 genomes]
rs56695781	0.93[ASN][1000 genomes]
rs60574021	0.96[ASN][1000 genomes]
rs6439663	0.87[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439664	0.87[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439667	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439670	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6439671	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439672	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439673	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6439675	0.86[ASN][1000 genomes]
rs6761993	0.86[ASN][1000 genomes]
rs6766755	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6771717	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6773117	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6775389	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs6777816	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6777873	0.81[EUR][1000 genomes]
rs6783508	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6783999	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6784005	0.92[CEU][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6786302	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6786648	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6793936	0.99[ASN][1000 genomes]
rs6793966	0.83[AMR][1000 genomes]
rs6797509	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6800032	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6800690	0.86[ASN][1000 genomes]
rs6802291	0.89[ASN][1000 genomes]
rs6803618	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs6809943	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7431100	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7434143	0.86[ASN][1000 genomes]
rs7611847	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7614422	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7617932	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7621932	0.97[ASN][1000 genomes]
rs7627443	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7629882	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7630571	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7631017	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7633629	0.97[ASN][1000 genomes]
rs7639692	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7645773	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7647451	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7648817	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7649211	0.82[EUR][1000 genomes]
rs7651085	0.86[ASN][1000 genomes]
rs7651644	0.81[EUR][1000 genomes]
rs835649	1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap]
rs856662	0.81[ASN][1000 genomes]
rs9289518	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9289519	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9289520	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs938524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs938525	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9682106	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9811169	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9815771	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9817453	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9817967	0.86[ASN][1000 genomes]
rs9818397	0.93[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9818792	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9819572	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9819743	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9819804	0.82[EUR][1000 genomes]
rs9821557	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9823565	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9827648	0.87[ASW][hapmap];0.96[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9828009	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[ASN][1000 genomes]
rs9832045	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9833952	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs9834250	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9834438	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9834861	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9835096	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9836807	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9837990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs9838022	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9841985	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9842145	0.84[ASN][1000 genomes]
rs9842436	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9842577	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843352	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843733	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9846334	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9846691	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9846754	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9847548	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9848867	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9849767	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9851726	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9853417	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9855314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9856828	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9859665	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9859810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9860774	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9863551	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9864926	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9864941	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9865545	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870377	0.85[ASN][1000 genomes]
rs9871987	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9874887	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878031	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9878117	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878367	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878464	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9880708	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9881139	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs9883131	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9883979	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1533445	NCK1	cis	parietal	SCAN
rs1533445	TMEM22	cis	cerebellum	SCAN
rs1533445	ATP1B3	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136506400-136511400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:136506400-136521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:136506600-136511200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:136506600-136511200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:136506600-136511200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:136506600-136511200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:136506600-136511200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:136506600-136511200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:136506600-136511200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:136506600-136511200	Weak transcription	Fetal Brain Male	brain
11	chr3:136506600-136511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:136506600-136511800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:136506600-136521000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:136506600-136521200	Weak transcription	Hela-S3	cervix
15	chr3:136506800-136511200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:136506800-136511400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:136506800-136511600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:136506800-136511800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:136507200-136510800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:136507200-136511200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:136507200-136511200	Weak transcription	Brain Angular Gyrus	brain
22	chr3:136507400-136511200	Weak transcription	Brain Substantia Nigra	brain
23	chr3:136508800-136513600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr3:136509000-136511000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:136510000-136511400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:136510200-136510400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links