Variant report

Variant	rs6778488
Chromosome Location	chr3:144828187-144828188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10804698	0.91[EUR][1000 genomes]
rs11712518	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11714435	0.91[EUR][1000 genomes]
rs11714725	1.00[EUR][1000 genomes]
rs12695792	0.93[EUR][1000 genomes]
rs4254701	0.91[EUR][1000 genomes]
rs4362764	0.91[EUR][1000 genomes]
rs4681642	0.91[EUR][1000 genomes]
rs61294843	1.00[EUR][1000 genomes]
rs62275336	0.92[AFR][1000 genomes]
rs6440286	0.91[EUR][1000 genomes]
rs6440289	0.91[EUR][1000 genomes]
rs6440290	0.91[EUR][1000 genomes]
rs6440311	0.98[EUR][1000 genomes]
rs6440325	0.81[AMR][1000 genomes]
rs6765625	1.00[EUR][1000 genomes]
rs6765683	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778480	0.91[EUR][1000 genomes]
rs6782683	0.91[EUR][1000 genomes]
rs6786747	0.93[EUR][1000 genomes]
rs6788584	0.85[EUR][1000 genomes]
rs6809974	0.91[EUR][1000 genomes]
rs7427359	0.98[EUR][1000 genomes]
rs7427634	0.91[EUR][1000 genomes]
rs7427709	0.91[EUR][1000 genomes]
rs7619338	0.96[EUR][1000 genomes]
rs7623306	0.96[EUR][1000 genomes]
rs7624601	0.98[EUR][1000 genomes]
rs7646371	0.98[EUR][1000 genomes]
rs9289689	0.91[EUR][1000 genomes]
rs9289690	0.91[EUR][1000 genomes]
rs9827899	1.00[EUR][1000 genomes]
rs9843234	0.98[EUR][1000 genomes]
rs9849958	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859874	0.91[EUR][1000 genomes]
rs9863285	0.98[EUR][1000 genomes]
rs9865339	0.98[EUR][1000 genomes]
rs9877095	0.91[EUR][1000 genomes]
rs9917709	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1004792	chr3:144658885-145191801	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877577	chr3:144701909-144864974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv877578	chr3:144734068-144843921	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877579	chr3:144815506-144933621	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877580	chr3:144815506-144979382	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877581	chr3:144815506-145181910	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv998288	chr3:144815560-145147528	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144826400-144829000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:144827600-144828400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:144828000-144829200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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