Variant report

Variant	rs67844728
Chromosome Location	chr17:66576490-66576491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11077624	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11649763	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11651150	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11654873	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11654879	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11656128	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3744506	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59183747	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59251979	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60871479	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67127022	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67717905	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67810719	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68005369	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68007754	0.84[ASN][1000 genomes]
rs7222228	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8082354	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66539200-66588000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:66551800-66587800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:66552000-66584200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:66552000-66585200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr17:66571200-66578000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:66572000-66578400	Enhancers	NHDF-Ad	bronchial
7	chr17:66572200-66577600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr17:66572200-66591800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:66572400-66577400	Enhancers	Adipose Nuclei	Adipose
10	chr17:66572600-66581200	Weak transcription	Gastric	stomach
11	chr17:66572800-66582800	Weak transcription	Brain Angular Gyrus	brain
12	chr17:66573400-66577200	Weak transcription	NHLF	lung
13	chr17:66573600-66578000	Weak transcription	Right Atrium	heart
14	chr17:66573800-66578200	Weak transcription	Placenta	Placenta
15	chr17:66574000-66576600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr17:66575200-66576800	Flanking Active TSS	Liver	Liver
17	chr17:66575200-66577200	Enhancers	Fetal Thymus	thymus
18	chr17:66575200-66577400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr17:66575400-66576800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr17:66575400-66577000	Enhancers	Esophagus	oesophagus
21	chr17:66575400-66577200	Enhancers	Ovary	ovary
22	chr17:66575600-66577400	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr17:66575800-66576600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr17:66575800-66579400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr17:66576000-66576600	Flanking Active TSS	HepG2	liver
26	chr17:66576000-66577200	Enhancers	Colon Smooth Muscle	Colon
27	chr17:66576000-66577400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr17:66576000-66577400	Enhancers	Fetal Lung	lung
29	chr17:66576000-66578000	Enhancers	Osteobl	bone
30	chr17:66576000-66578400	Weak transcription	Pancreas	Pancrea
31	chr17:66576200-66576800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr17:66576200-66578000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr17:66576200-66581800	Weak transcription	Lung	lung
34	chr17:66576200-66581800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr17:66576400-66576800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:66576400-66577000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr17:66576400-66577000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
38	chr17:66576400-66577000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr17:66576400-66577400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:66576400-66577400	Enhancers	Spleen	Spleen
41	chr17:66576400-66581000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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