Variant report

Variant	rs7222228
Chromosome Location	chr17:66569864-66569865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66561395..66563836-chr17:66567665..66570201,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11077624	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11649763	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11651150	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11654873	0.97[EUR][1000 genomes]
rs11654879	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11656128	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3744506	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59183747	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59251979	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60871479	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67127022	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67717905	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67810719	0.81[EUR][1000 genomes]
rs67844728	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68005369	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8082354	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66538800-66575800	Weak transcription	Spleen	Spleen
2	chr17:66539200-66588000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr17:66551800-66570600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr17:66551800-66572000	Weak transcription	Gastric	stomach
5	chr17:66551800-66587800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr17:66552000-66584200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr17:66552000-66585200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr17:66563600-66572400	Weak transcription	Right Atrium	heart
9	chr17:66564200-66572000	Weak transcription	Placenta	Placenta
10	chr17:66566000-66572000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:66567000-66572200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr17:66567800-66571000	Strong transcription	Liver	Liver
13	chr17:66568600-66570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:66569200-66572600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:66569400-66570200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr17:66569400-66572000	Weak transcription	Lung	lung
17	chr17:66569400-66572000	Weak transcription	Osteobl	bone
18	chr17:66569400-66572200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr17:66569400-66572200	Weak transcription	Fetal Lung	lung
20	chr17:66569800-66572400	Weak transcription	Stomach Smooth Muscle	stomach

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