Variant report

Variant	rs67810719
Chromosome Location	chr17:66577043-66577044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66576950..66578591-chr17:66586418..66589362,2	MCF-7	breast:
2	chr17:66571720..66573973-chr17:66576760..66578500,2	K562	blood:

Variant related genes	Relation type
ENSG00000267659	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11649965	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11654873	0.81[EUR][1000 genomes]
rs11654879	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11655376	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11655628	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12938535	0.83[ASN][1000 genomes]
rs12938644	0.87[ASN][1000 genomes]
rs12947816	0.83[ASN][1000 genomes]
rs16973066	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3826431	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59183747	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67844728	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68007754	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7222228	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66539200-66588000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:66551800-66587800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:66552000-66584200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:66552000-66585200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr17:66571200-66578000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:66572000-66578400	Enhancers	NHDF-Ad	bronchial
7	chr17:66572200-66577600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr17:66572200-66591800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:66572400-66577400	Enhancers	Adipose Nuclei	Adipose
10	chr17:66572600-66581200	Weak transcription	Gastric	stomach
11	chr17:66572800-66582800	Weak transcription	Brain Angular Gyrus	brain
12	chr17:66573400-66577200	Weak transcription	NHLF	lung
13	chr17:66573600-66578000	Weak transcription	Right Atrium	heart
14	chr17:66573800-66578200	Weak transcription	Placenta	Placenta
15	chr17:66575200-66577200	Enhancers	Fetal Thymus	thymus
16	chr17:66575200-66577400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr17:66575400-66577200	Enhancers	Ovary	ovary
18	chr17:66575600-66577400	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr17:66575800-66579400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr17:66576000-66577200	Enhancers	Colon Smooth Muscle	Colon
21	chr17:66576000-66577400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr17:66576000-66577400	Enhancers	Fetal Lung	lung
23	chr17:66576000-66578000	Enhancers	Osteobl	bone
24	chr17:66576000-66578400	Weak transcription	Pancreas	Pancrea
25	chr17:66576200-66578000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr17:66576200-66581800	Weak transcription	Lung	lung
27	chr17:66576200-66581800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr17:66576400-66577400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr17:66576400-66577400	Enhancers	Spleen	Spleen
30	chr17:66576400-66581000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr17:66576600-66579600	Enhancers	HepG2	liver
32	chr17:66576600-66580800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr17:66576800-66577400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr17:66576800-66577400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr17:66576800-66578000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:66576800-66578000	Enhancers	Liver	Liver
37	chr17:66576800-66578000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr17:66576800-66581200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr17:66576800-66588000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr17:66577000-66577200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:66577000-66577400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:66577000-66580800	Weak transcription	Fetal Kidney	kidney
43	chr17:66577000-66581200	Weak transcription	Esophagus	oesophagus

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