Variant report

Variant	rs3826431
Chromosome Location	chr17:66595986-66595987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11649965	0.96[ASN][1000 genomes]
rs11655376	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11655628	0.96[ASN][1000 genomes]
rs12938535	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12938644	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12947816	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16973066	0.96[ASN][1000 genomes]
rs66497703	0.80[ASN][1000 genomes]
rs67810719	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs68007754	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66593000-66596000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr17:66593800-66597800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr17:66594000-66598000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr17:66594200-66596400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr17:66594200-66597600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr17:66594200-66597600	Active TSS	Liver	Liver
7	chr17:66594400-66596000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
8	chr17:66594600-66597800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr17:66594800-66597800	Bivalent/Poised TSS	Thymus	Thymus
10	chr17:66594800-66598000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr17:66595000-66596000	Flanking Bivalent TSS/Enh	HepG2	liver
12	chr17:66595000-66597600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:66595000-66597800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr17:66595200-66596000	Active TSS	Brain Hippocampus Middle	brain
15	chr17:66595200-66596200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr17:66595200-66596400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr17:66595200-66597400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr17:66595200-66597600	Active TSS	Fetal Kidney	kidney
19	chr17:66595200-66597800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:66595200-66598000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
21	chr17:66595400-66596200	Active TSS	Fetal Heart	heart
22	chr17:66595400-66596200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
23	chr17:66595400-66597800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr17:66595600-66596000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr17:66595600-66596000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
26	chr17:66595600-66596000	Flanking Active TSS	NHDF-Ad	bronchial
27	chr17:66595600-66596200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr17:66595600-66596200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr17:66595600-66596200	Flanking Active TSS	Osteobl	bone
30	chr17:66595600-66596600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
31	chr17:66595600-66597400	Active TSS	Right Atrium	heart
32	chr17:66595600-66597600	Active TSS	Gastric	stomach
33	chr17:66595600-66597600	Active TSS	Lung	lung
34	chr17:66595600-66597600	Bivalent/Poised TSS	NHLF	lung
35	chr17:66595600-66597800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr17:66595600-66598000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr17:66595800-66596000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
38	chr17:66595800-66596000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
39	chr17:66595800-66596000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr17:66595800-66596000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
41	chr17:66595800-66596000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
42	chr17:66595800-66596000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr17:66595800-66596000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr17:66595800-66596000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr17:66595800-66596000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr17:66595800-66596000	Active TSS	Colonic Mucosa	Colon
47	chr17:66595800-66596000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
48	chr17:66595800-66596000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
49	chr17:66595800-66596000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
50	chr17:66595800-66596000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links