Variant report

Variant	rs66497703
Chromosome Location	chr17:66602629-66602630
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1017094	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11649965	0.81[AFR][1000 genomes]
rs11654573	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11655628	0.81[AFR][1000 genomes]
rs12938535	0.80[ASN][1000 genomes]
rs12947816	0.80[ASN][1000 genomes]
rs3826431	0.80[ASN][1000 genomes]
rs66768286	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66599400-66604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr17:66600000-66604000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:66601800-66603600	Enhancers	HepG2	liver
4	chr17:66601800-66604000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:66602200-66604000	Enhancers	Liver	Liver
6	chr17:66602200-66605800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr17:66602600-66602800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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