Variant report
| Variant | rs6792011 |
|---|---|
| Chromosome Location | chr3:54523113-54523114 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:54522382..54524571-chr3:54629813..54631587,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11716668 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs11716772 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs12633481 | 1.00[YRI][hapmap] |
| rs6445670 | 1.00[YRI][hapmap] |
| rs6445672 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs6445674 | 1.00[YRI][hapmap] |
| rs6766016 | 1.00[YRI][hapmap] |
| rs6804590 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs6807093 | 1.00[YRI][hapmap] |
| rs7374625 | 1.00[YRI][hapmap] |
| rs7375043 | 0.85[AFR][1000 genomes] |
| rs7431901 | 1.00[YRI][hapmap] |
| rs7642042 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs9758587 | 1.00[YRI][hapmap] |
| rs9825211 | 1.00[YRI][hapmap] |
| rs9855450 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014595 | chr3:53944473-54846754 | Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428084 | chr3:54404258-54742756 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv876810 | chr3:54480798-54585416 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
