Variant report

Variant	rs6804590
Chromosome Location	chr3:54526228-54526229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11716668	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11716772	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2359787	1.00[AMR][1000 genomes]
rs57773274	1.00[AMR][1000 genomes]
rs6445670	1.00[YRI][hapmap]
rs6445672	1.00[YRI][hapmap]
rs6445674	1.00[YRI][hapmap]
rs6766016	1.00[YRI][hapmap]
rs6792011	1.00[YRI][hapmap]
rs6807093	1.00[YRI][hapmap]
rs7374625	1.00[YRI][hapmap]
rs7375043	0.93[AFR][1000 genomes]
rs7431901	1.00[YRI][hapmap]
rs7642042	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9758587	1.00[YRI][hapmap]
rs9825211	1.00[YRI][hapmap]
rs9855450	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54524000-54527000	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links