Variant report

Variant	rs57773274
Chromosome Location	chr3:54695568-54695569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11716668	1.00[AMR][1000 genomes]
rs6804590	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv525644	chr3:54653316-54709987	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54685200-54704000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:54689200-54697200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:54691400-54704000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:54693400-54697800	Weak transcription	Right Atrium	heart
5	chr3:54693400-54702400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:54693600-54699200	Enhancers	Fetal Muscle Leg	muscle
7	chr3:54693800-54696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:54694000-54702200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:54694000-54702400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:54694000-54702600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:54694000-54702800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:54694400-54695600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:54694400-54695600	Enhancers	Fetal Muscle Trunk	muscle
14	chr3:54694600-54695600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:54694600-54695800	Enhancers	Brain Anterior Caudate	brain
16	chr3:54694600-54696200	Enhancers	Fetal Stomach	stomach
17	chr3:54694800-54695600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:54694800-54697200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:54695000-54695600	Enhancers	Brain Hippocampus Middle	brain
20	chr3:54695200-54695600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr3:54695200-54697200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:54695200-54697800	Weak transcription	Psoas Muscle	Psoas
23	chr3:54695200-54703200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:54695400-54696000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:54695400-54697000	Weak transcription	Fetal Kidney	kidney
26	chr3:54695400-54697600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:54695400-54697600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:54695400-54697800	Weak transcription	Spleen	Spleen
29	chr3:54695400-54698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:54695400-54703800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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