Variant report

Variant	rs6796357
Chromosome Location	chr3:70550200-70550201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11128176	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11128179	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12490416	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13096169	0.83[ASN][1000 genomes]
rs1491609	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17790790	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4491863	0.83[ASN][1000 genomes]
rs4572735	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4638930	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6549341	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7431027	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7650600	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9849440	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9871358	0.93[CEU][hapmap];0.83[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999046	chr3:70549472-70576944	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70549800-70551800	Enhancers	Fetal Thymus	thymus
2	chr3:70550000-70551400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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