Variant report

Variant	rs9849440
Chromosome Location	chr3:70583777-70583778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11128179	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12490416	0.85[ASN][1000 genomes]
rs1491609	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790790	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2172191	0.86[EUR][1000 genomes]
rs4572735	0.85[ASN][1000 genomes]
rs4638930	0.85[ASN][1000 genomes]
rs62256300	0.80[ASN][1000 genomes]
rs6549341	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6796357	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7431027	0.85[ASN][1000 genomes]
rs7650600	0.81[ASN][1000 genomes]
rs9871358	0.85[CEU][hapmap];0.93[GIH][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9849440	FRMD4B	cis	parietal	SCAN
rs9849440	CACNA1H	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70581600-70592000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:70581800-70585000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:70582400-70585000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:70583200-70585600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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