Variant report

Variant	rs6798987
Chromosome Location	chr3:86039091-86039092
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11715949	0.82[EUR][1000 genomes]
rs12636273	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13068011	0.86[EUR][1000 genomes]
rs2324981	0.81[AMR][1000 genomes]
rs4302394	0.83[EUR][1000 genomes]
rs4364177	0.83[EUR][1000 genomes]
rs4856606	0.83[EUR][1000 genomes]
rs4856607	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6549063	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6762937	0.81[EUR][1000 genomes]
rs6769012	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6782553	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7609709	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7614073	0.81[EUR][1000 genomes]
rs7626873	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7630752	0.81[AMR][1000 genomes]
rs7636206	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7640041	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7648895	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7650420	0.81[AMR][1000 genomes]
rs9309996	0.82[EUR][1000 genomes]
rs9310000	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9713674	0.83[EUR][1000 genomes]
rs9810861	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9824085	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9829446	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9841158	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9846878	0.82[EUR][1000 genomes]
rs9850482	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9851502	0.83[EUR][1000 genomes]
rs9875386	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9985228	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9985441	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:86038200-86039400	Weak transcription	Brain Substantia Nigra	brain

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