Variant report

Variant	rs9985228
Chromosome Location	chr3:86054853-86054854
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10084716	0.85[EUR][1000 genomes]
rs11715949	0.85[EUR][1000 genomes]
rs12494511	0.81[EUR][1000 genomes]
rs12636273	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12714642	0.84[EUR][1000 genomes]
rs13068011	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13068185	0.80[EUR][1000 genomes]
rs13085195	0.82[EUR][1000 genomes]
rs2324981	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4129497	0.81[EUR][1000 genomes]
rs4302393	0.81[EUR][1000 genomes]
rs4302394	0.86[EUR][1000 genomes]
rs4308293	0.84[EUR][1000 genomes]
rs4364177	0.86[EUR][1000 genomes]
rs4488844	0.82[EUR][1000 genomes]
rs4856606	0.86[EUR][1000 genomes]
rs4856607	0.86[EUR][1000 genomes]
rs6549063	0.86[EUR][1000 genomes]
rs6762937	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6769012	0.86[EUR][1000 genomes]
rs6782553	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6787901	0.81[EUR][1000 genomes]
rs6796402	0.80[EUR][1000 genomes]
rs6798987	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7426412	0.82[EUR][1000 genomes]
rs7609709	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7614073	0.84[EUR][1000 genomes]
rs7626873	0.86[EUR][1000 genomes]
rs7630752	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7632162	0.82[EUR][1000 genomes]
rs7636206	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7640041	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7642281	0.82[EUR][1000 genomes]
rs7648895	0.86[EUR][1000 genomes]
rs9309996	0.85[EUR][1000 genomes]
rs9310000	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9713674	0.85[EUR][1000 genomes]
rs9810861	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9824085	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9829446	0.85[EUR][1000 genomes]
rs9832847	0.84[EUR][1000 genomes]
rs9841158	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9846878	0.85[EUR][1000 genomes]
rs9850482	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9851502	0.86[EUR][1000 genomes]
rs9875386	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9985441	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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