Variant report

Variant	rs9810861
Chromosome Location	chr3:86087007-86087008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10084716	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11715949	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11924631	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12494511	0.82[EUR][1000 genomes]
rs12636273	0.92[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12714642	0.84[EUR][1000 genomes]
rs13068011	0.84[EUR][1000 genomes]
rs13068185	0.80[EUR][1000 genomes]
rs13085195	0.80[EUR][1000 genomes]
rs1562626	0.88[CEU][hapmap]
rs2324937	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap]
rs2324938	1.00[CEU][hapmap]
rs2324939	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2324973	0.84[AMR][1000 genomes]
rs2324981	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2325005	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap]
rs3901898	0.84[CEU][hapmap]
rs3930071	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs4129497	0.82[EUR][1000 genomes]
rs4234702	1.00[CEU][hapmap]
rs4302393	0.82[EUR][1000 genomes]
rs4302394	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4308293	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4364177	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4488844	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs4555539	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs4688896	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4856279	0.85[CEU][hapmap]
rs4856606	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4856607	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6549063	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6762937	0.88[EUR][1000 genomes]
rs6769012	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6782553	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6787901	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs6796380	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6796402	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6798987	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7426412	0.83[EUR][1000 genomes]
rs7609709	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7614073	0.85[EUR][1000 genomes]
rs7621146	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs7623735	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7625223	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7626873	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7630752	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7632162	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7634560	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap]
rs7636206	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7640041	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7642281	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7648895	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7650420	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9309996	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9310000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9713674	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9824085	0.89[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829446	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9841158	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9846878	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9850482	0.95[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9851502	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9866273	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9875386	0.93[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9985228	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9985441	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86087000-86087400	Enhancers	Brain Hippocampus Middle	brain

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