Variant report

Variant	rs6804583
Chromosome Location	chr3:157326551-157326552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11914492	0.82[EUR][1000 genomes]
rs12696052	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4261829	0.81[EUR][1000 genomes]
rs4395360	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4472012	0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs4502543	0.86[ASN][1000 genomes]
rs4596103	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680382	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680383	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792250	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9289986	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9289987	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9289989	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9812718	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs9817096	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9837954	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9838074	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9870015	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv4081	chr3:157318466-157347655	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157324000-157326600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:157324400-157327200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:157324600-157336400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:157324800-157326600	Weak transcription	Osteobl	bone
5	chr3:157324800-157326800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157324800-157327400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:157324800-157327800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157324800-157328000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:157325400-157327400	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:157326200-157327200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:157326400-157326600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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