Variant report

Variant	rs4680383
Chromosome Location	chr3:157324504-157324505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157324181..157324705-chr3:157417909..157418475,2	MCF-7	breast:
2	chr10:71668806..71669307-chr3:157324109..157324687,3	K562	blood:
3	chr3:157324285..157324887-chr3:158249956..158250485,2	MCF-7	breast:
4	chr10:71668805..71669306-chr3:157324395..157324953,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11914492	0.83[EUR][1000 genomes]
rs12696052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1392185	0.80[EUR][1000 genomes]
rs1463853	0.80[EUR][1000 genomes]
rs1499781	0.80[EUR][1000 genomes]
rs1499782	0.80[EUR][1000 genomes]
rs4261829	0.82[EUR][1000 genomes]
rs4395360	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4472012	0.83[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4502543	0.90[ASN][1000 genomes]
rs4596103	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680382	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792250	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6804583	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9289986	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9289987	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9289989	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9812718	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]
rs9817096	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9837954	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9838074	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9870015	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv4081	chr3:157318466-157347655	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157323400-157324800	Enhancers	Fetal Brain Male	brain
2	chr3:157323600-157325600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:157323800-157324800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:157323800-157325800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:157323800-157326200	Enhancers	Brain Germinal Matrix	brain
6	chr3:157324000-157324800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:157324000-157324800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:157324000-157324800	Enhancers	Brain Anterior Caudate	brain
9	chr3:157324000-157324800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:157324000-157326600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:157324200-157324600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:157324200-157324600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:157324200-157324600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:157324200-157324600	Enhancers	Fetal Muscle Leg	muscle
15	chr3:157324200-157324600	Enhancers	Stomach Mucosa	stomach
16	chr3:157324200-157324800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:157324200-157324800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:157324200-157324800	Enhancers	Adipose Nuclei	Adipose
19	chr3:157324200-157324800	Enhancers	Liver	Liver
20	chr3:157324200-157325200	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:157324400-157324600	Flanking Active TSS	Brain Substantia Nigra	brain
22	chr3:157324400-157324800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:157324400-157324800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:157324400-157324800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr3:157324400-157324800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:157324400-157324800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:157324400-157324800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:157324400-157324800	Enhancers	Fetal Muscle Trunk	muscle
29	chr3:157324400-157324800	Enhancers	HUVEC	blood vessel
30	chr3:157324400-157324800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr3:157324400-157324800	Active TSS	Osteobl	bone
32	chr3:157324400-157325200	Enhancers	Fetal Brain Female	brain
33	chr3:157324400-157327200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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