Variant report

Variant	rs1392185
Chromosome Location	chr3:157357981-157357982
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11914492	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12696052	0.80[EUR][1000 genomes]
rs1463853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1488194	0.85[EUR][1000 genomes]
rs1499781	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1499782	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2649733	0.86[EUR][1000 genomes]
rs2722373	0.86[EUR][1000 genomes]
rs4261829	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4518078	0.96[ASN][1000 genomes]
rs4680382	0.89[EUR][1000 genomes]
rs4680383	0.80[EUR][1000 genomes]
rs4680385	0.95[ASN][1000 genomes]
rs6764890	0.88[ASN][1000 genomes]
rs6768486	0.95[ASN][1000 genomes]
rs9289989	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1007903	chr3:157351662-157383667	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157357400-157358200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:157357600-157358200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:157357600-157358200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:157357600-157358200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:157357800-157358200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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