Variant report
| Variant | rs1499781 |
|---|---|
| Chromosome Location | chr3:157340480-157340481 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:157338004..157341097-chr3:157342767..157346033,3 | K562 | blood: | |
| 2 | chr3:157338817..157342476-chr3:157350629..157354187,3 | K562 | blood: | |
| 3 | chr3:157338817..157341754-chr3:157350629..157353502,2 | K562 | blood: | |
| 4 | chr3:157333608..157336028-chr3:157339790..157343103,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11914492 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12696052 | 0.80[EUR][1000 genomes] |
| rs1392185 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1463853 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1488194 | 0.86[EUR][1000 genomes] |
| rs1499782 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2649733 | 0.86[EUR][1000 genomes] |
| rs2722373 | 0.86[EUR][1000 genomes] |
| rs4261829 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4518078 | 0.94[ASN][1000 genomes] |
| rs4596103 | 0.80[EUR][1000 genomes] |
| rs4680382 | 0.89[EUR][1000 genomes] |
| rs4680383 | 0.80[EUR][1000 genomes] |
| rs4680385 | 0.85[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6764890 | 0.90[ASN][1000 genomes] |
| rs6768486 | 0.85[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9289989 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829767 | chr3:157306411-157490444 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv4081 | chr3:157318466-157347655 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2427927 | chr3:157338497-157343574 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2762351 | chr3:157338661-157341682 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv441845 | chr3:157339388-157341682 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3369725 | chr3:157339408-157343323 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:157338200-157342400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
