Variant report

Variant	rs4680385
Chromosome Location	chr3:157334369-157334370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11914492	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1392185	0.95[ASN][1000 genomes]
rs1463853	0.94[ASN][1000 genomes]
rs1499781	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1499782	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4261829	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4502543	0.87[EUR][1000 genomes]
rs4518078	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6414386	0.87[CEU][hapmap];0.83[AFR][1000 genomes]
rs6764890	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6768486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv4081	chr3:157318466-157347655	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157324600-157336400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:157328200-157335600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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