Variant report

Variant	rs6805691
Chromosome Location	chr3:113185303-113185304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113184639..113186627-chr3:113186960..113188718,2	MCF-7	breast:
2	chr3:113184124..113185846-chr3:113185911..113187476,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11715198	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12488964	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13091945	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1906142	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1979554	0.85[EUR][1000 genomes]
rs2054823	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129430	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171293	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2895413	0.82[EUR][1000 genomes]
rs35581027	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35935366	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4682138	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4682486	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55711506	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6438140	0.85[EUR][1000 genomes]
rs6438143	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6438144	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6438145	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6438146	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6438147	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6438148	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66524865	0.81[EUR][1000 genomes]
rs6768117	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6769970	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6775574	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777880	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6785962	0.87[EUR][1000 genomes]
rs7617772	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7618884	0.83[EUR][1000 genomes]
rs7621210	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7623122	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7623389	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7625841	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7631730	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7633428	0.81[EUR][1000 genomes]
rs7642163	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7646985	0.81[AMR][1000 genomes]
rs7650538	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs775232	0.81[EUR][1000 genomes]
rs775233	0.83[EUR][1000 genomes]
rs9682734	0.81[EUR][1000 genomes]
rs9815835	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840124	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9848087	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866748	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869141	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3413713	chr3:113185255-113185783	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113146000-113191000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:113160200-113190000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:113160400-113186800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:113160400-113188800	Weak transcription	Colonic Mucosa	Colon
5	chr3:113160400-113191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:113160400-113192800	Weak transcription	Stomach Mucosa	stomach
7	chr3:113160600-113188600	Weak transcription	Psoas Muscle	Psoas
8	chr3:113160600-113190600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:113160600-113203800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:113160800-113187000	Weak transcription	HUVEC	blood vessel
11	chr3:113160800-113187600	Weak transcription	NHLF	lung
12	chr3:113160800-113189400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:113160800-113189400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:113160800-113189600	Weak transcription	NHEK	skin
15	chr3:113160800-113203800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:113160800-113203800	Weak transcription	Aorta	Aorta
17	chr3:113160800-113224800	Weak transcription	Placenta	Placenta
18	chr3:113160800-113232600	Weak transcription	Right Ventricle	heart
19	chr3:113161000-113189600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:113161000-113189600	Weak transcription	Brain Substantia Nigra	brain
21	chr3:113161000-113190800	Weak transcription	K562	blood
22	chr3:113161400-113192200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:113164000-113185600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:113166200-113188800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:113166600-113186400	Weak transcription	A549	lung
26	chr3:113166600-113203800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:113169000-113186600	Weak transcription	Small Intestine	intestine
28	chr3:113169800-113191600	Weak transcription	Fetal Brain Male	brain
29	chr3:113172600-113187000	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:113172600-113203800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:113172800-113232800	Weak transcription	HSMMtube	muscle
32	chr3:113173200-113187000	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:113173800-113190200	Weak transcription	Fetal Heart	heart
34	chr3:113174600-113190200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:113175000-113190600	Weak transcription	Brain Germinal Matrix	brain
36	chr3:113176200-113186600	Weak transcription	Osteobl	bone
37	chr3:113176400-113233200	Weak transcription	Gastric	stomach
38	chr3:113177000-113186200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:113177400-113225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:113177600-113224400	Weak transcription	Spleen	Spleen
41	chr3:113177800-113187000	Weak transcription	Lung	lung
42	chr3:113179400-113186400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr3:113179400-113186800	Weak transcription	GM12878-XiMat	blood
44	chr3:113179400-113187400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:113179600-113186200	Weak transcription	HepG2	liver
46	chr3:113179600-113186400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:113179600-113186400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:113179600-113186400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr3:113179600-113186600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:113179600-113186800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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