Variant report

Variant	rs9815835
Chromosome Location	chr3:113159741-113159742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11715198	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12488964	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13091945	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1906142	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1979554	0.86[EUR][1000 genomes]
rs2054823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129430	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171293	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2895413	0.83[EUR][1000 genomes]
rs35581027	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35935366	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4682138	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4682486	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55711506	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6438140	0.86[EUR][1000 genomes]
rs6438143	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6438144	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6438145	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6438146	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6438147	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6438148	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66524865	0.82[EUR][1000 genomes]
rs6768117	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6769970	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6775574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777880	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6785962	0.86[EUR][1000 genomes]
rs6805691	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617772	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7618884	0.84[EUR][1000 genomes]
rs7621210	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7623122	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7623389	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7625841	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7631730	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7633428	0.82[EUR][1000 genomes]
rs7642163	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7646985	0.82[AMR][1000 genomes]
rs7650538	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs775232	0.82[EUR][1000 genomes]
rs775233	0.84[EUR][1000 genomes]
rs9682734	0.82[EUR][1000 genomes]
rs9840124	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9848087	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869141	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113074400-113184400	Weak transcription	Hela-S3	cervix
2	chr3:113109200-113159800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:113134600-113159800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:113135200-113164600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:113136000-113176400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:113137400-113160000	Weak transcription	Fetal Stomach	stomach
7	chr3:113140000-113160000	Weak transcription	Psoas Muscle	Psoas
8	chr3:113145800-113159800	Weak transcription	Esophagus	oesophagus
9	chr3:113145800-113159800	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:113145800-113159800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:113145800-113159800	Weak transcription	Thymus	Thymus
12	chr3:113145800-113160000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:113145800-113160200	Weak transcription	Aorta	Aorta
14	chr3:113145800-113166000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:113145800-113176600	Weak transcription	Spleen	Spleen
16	chr3:113146000-113159800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:113146000-113160000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:113146000-113160000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:113146000-113160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:113146000-113172000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:113146000-113191000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:113146200-113160000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:113146200-113160000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr3:113146200-113160200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:113146200-113178600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr3:113146400-113160000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:113146400-113165000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr3:113147000-113159800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:113147000-113159800	Weak transcription	Adipose Nuclei	Adipose
30	chr3:113147000-113165600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:113147200-113160200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:113147400-113159800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr3:113147400-113165400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr3:113147600-113160400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr3:113147600-113162400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:113147800-113159800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:113147800-113159800	Weak transcription	Ovary	ovary
38	chr3:113147800-113178800	Weak transcription	HSMM	muscle
39	chr3:113148000-113160000	Weak transcription	Left Ventricle	heart
40	chr3:113149000-113159800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:113149000-113160000	Weak transcription	Liver	Liver
42	chr3:113150400-113159800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:113150400-113160200	Weak transcription	Primary T cells from cord blood	blood
44	chr3:113151200-113159800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:113155400-113159800	Weak transcription	Fetal Thymus	thymus
46	chr3:113156000-113159800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:113156000-113159800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:113156000-113159800	Weak transcription	NH-A	brain
49	chr3:113156000-113160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:113156000-113160000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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