Variant report

Variant	rs6807422
Chromosome Location	chr3:156031823-156031824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156026382..156029375-chr3:156031485..156033087,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73012228	1.00[AMR][1000 genomes]
rs7634784	1.00[AMR][1000 genomes]
rs9823385	1.00[AMR][1000 genomes]
rs9825048	1.00[AMR][1000 genomes]
rs9856623	1.00[AMR][1000 genomes]
rs9865444	1.00[AMR][1000 genomes]
rs9868426	1.00[AMR][1000 genomes]
rs9869978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach
2	chr3:156021800-156035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156022800-156035600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:156026400-156038400	Weak transcription	Aorta	Aorta
5	chr3:156028200-156032200	Weak transcription	Spleen	Spleen
6	chr3:156029800-156034400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:156029800-156035000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:156030000-156035000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:156030000-156035200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:156030000-156035400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:156030000-156035400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:156030000-156035400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:156030200-156034800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:156030600-156036400	Enhancers	Hela-S3	cervix
15	chr3:156030800-156035600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:156031200-156032000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:156031200-156032200	Enhancers	HMEC	breast
18	chr3:156031200-156033200	Enhancers	NHEK	skin
19	chr3:156031200-156033400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:156031400-156033000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:156031600-156032200	Weak transcription	Gastric	stomach
22	chr3:156031800-156034400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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