Variant report

Variant	rs9856623
Chromosome Location	chr3:155944885-155944886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13318658	1.00[AMR][1000 genomes]
rs6807422	1.00[AMR][1000 genomes]
rs73012228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634784	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9823385	1.00[AMR][1000 genomes]
rs9825048	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9865444	1.00[AMR][1000 genomes]
rs9868426	1.00[AMR][1000 genomes]
rs9869978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155936600-155945400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155936600-155951000	Weak transcription	Aorta	Aorta
3	chr3:155942000-155951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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