Variant report

Variant	rs6808328
Chromosome Location	chr3:24961210-24961211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12107912	1.00[AMR][1000 genomes]
rs6787744	1.00[AMR][1000 genomes]
rs73137222	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73137228	1.00[AMR][1000 genomes]
rs73137245	1.00[AMR][1000 genomes]
rs73137259	0.93[AFR][1000 genomes]
rs73137283	0.83[AFR][1000 genomes]
rs9813342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9813773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9835325	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9848164	0.83[AFR][1000 genomes]
rs9848183	0.83[AFR][1000 genomes]
rs9863730	0.83[AFR][1000 genomes]
rs9873969	0.82[AFR][1000 genomes]
rs9874500	0.83[AFR][1000 genomes]
rs9881889	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24957400-24964200	Weak transcription	Fetal Lung	lung
2	chr3:24961200-24961600	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links