Variant report

Variant	rs9848183
Chromosome Location	chr3:24994015-24994016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs57934035	1.00[AMR][1000 genomes]
rs6808328	0.83[AFR][1000 genomes]
rs73137222	0.86[AFR][1000 genomes]
rs73137259	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73137261	1.00[AMR][1000 genomes]
rs73137283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73137289	1.00[AMR][1000 genomes]
rs9813342	0.90[AFR][1000 genomes]
rs9813773	0.90[AFR][1000 genomes]
rs9835325	0.85[AFR][1000 genomes]
rs9848164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873969	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9874500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9881889	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460482	chr3:24966768-25071616	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589954	chr3:24966768-25071616	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24979200-24998400	Weak transcription	Right Atrium	heart
2	chr3:24987000-24996800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:24993400-24994200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:24993600-24995000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr3:24993800-24994400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr3:24994000-24994200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr3:24994000-24994400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr3:24994000-24994400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr3:24994000-24994800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:24994000-24994800	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links