Variant report

Variant	rs68092024
Chromosome Location	chr3:99691522-99691523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99683941..99686099-chr3:99690442..99692720,2	MCF-7	breast:
2	chr3:99686804..99688799-chr3:99690706..99692750,2	MCF-7	breast:
3	chr3:99686155..99688649-chr3:99689841..99691929,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1016914	0.94[AFR][1000 genomes]
rs1021102	0.90[AFR][1000 genomes]
rs10936005	0.82[ASN][1000 genomes]
rs10936008	0.82[ASN][1000 genomes]
rs13317017	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17174947	0.90[AFR][1000 genomes]
rs2452320	0.90[AFR][1000 genomes]
rs4244711	0.94[AFR][1000 genomes]
rs4244713	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4479633	0.94[AFR][1000 genomes]
rs4928232	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6440938	0.94[AFR][1000 genomes]
rs6765027	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6803204	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6809988	0.94[AFR][1000 genomes]
rs704583	0.94[AFR][1000 genomes]
rs7636447	0.90[AFR][1000 genomes]
rs7638900	0.81[ASN][1000 genomes]
rs793445	0.81[AFR][1000 genomes]
rs793447	0.90[AFR][1000 genomes]
rs793460	0.90[AFR][1000 genomes]
rs793461	0.90[AFR][1000 genomes]
rs793462	0.90[AFR][1000 genomes]
rs793463	0.90[AFR][1000 genomes]
rs793465	0.94[AFR][1000 genomes]
rs793466	0.86[AFR][1000 genomes]
rs793501	0.86[AFR][1000 genomes]
rs809415	0.85[AFR][1000 genomes]
rs812657	0.81[AFR][1000 genomes]
rs9817005	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9872871	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv999332	chr3:99690207-99774720	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99677400-99696600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:99677600-99692600	Weak transcription	Fetal Lung	lung
3	chr3:99678800-99691800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:99679600-99697000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:99686400-99691800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:99686600-99693400	Weak transcription	Placenta	Placenta
7	chr3:99687000-99693000	Weak transcription	Stomach Mucosa	stomach
8	chr3:99687200-99695200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:99688600-99694200	Weak transcription	Left Ventricle	heart
10	chr3:99689200-99693000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:99689200-99697400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:99689800-99702000	Weak transcription	Primary T cells from cord blood	blood
13	chr3:99690000-99692800	Weak transcription	GM12878-XiMat	blood
14	chr3:99690600-99697400	Weak transcription	Psoas Muscle	Psoas
15	chr3:99691000-99691800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:99691000-99691800	Enhancers	Brain Hippocampus Middle	brain
17	chr3:99691200-99691600	Enhancers	Brain Angular Gyrus	brain
18	chr3:99691200-99691600	Enhancers	Fetal Muscle Leg	muscle
19	chr3:99691200-99691600	Enhancers	Stomach Smooth Muscle	stomach
20	chr3:99691200-99691600	Enhancers	HSMM	muscle
21	chr3:99691200-99691600	Enhancers	HSMMtube	muscle
22	chr3:99691200-99691800	Enhancers	Fetal Stomach	stomach
23	chr3:99691400-99691600	Enhancers	Right Atrium	heart
24	chr3:99691400-99691600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr3:99691400-99691800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:99691400-99691800	Enhancers	Brain Cingulate Gyrus	brain
27	chr3:99691400-99691800	Enhancers	Brain Substantia Nigra	brain
28	chr3:99691400-99691800	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:99691400-99692000	Enhancers	Colon Smooth Muscle	Colon
30	chr3:99691400-99692000	Enhancers	HepG2	liver

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