The 2.0 version of rSNPBase

Variant report

Variant rs793447
Chromosome Location chr3:99598278-99598279
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:99595200-99602800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr3:99595400-99599800 Weak transcription Pancreas Pancrea
3 chr3:99595400-99599800 Weak transcription Spleen Spleen
4 chr3:99595400-99600000 Weak transcription Brain Angular Gyrus brain
5 chr3:99595400-99600600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr3:99595400-99602800 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr3:99595400-99603000 Weak transcription Stomach Mucosa stomach
8 chr3:99595400-99603400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr3:99595400-99603400 Weak transcription Small Intestine intestine
10 chr3:99595400-99608400 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr3:99595600-99598800 Weak transcription Fetal Stomach stomach
12 chr3:99595600-99599200 Weak transcription Brain Substantia Nigra brain
13 chr3:99595600-99599800 Weak transcription Brain Hippocampus Middle brain
14 chr3:99595600-99599800 Weak transcription Psoas Muscle Psoas
15 chr3:99595600-99600400 Weak transcription Left Ventricle heart
16 chr3:99595600-99602600 Weak transcription Fetal Intestine Large intestine
17 chr3:99595600-99603200 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr3:99595600-99607400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr3:99595600-99612800 Weak transcription Fetal Muscle Trunk muscle
20 chr3:99595800-99599800 Weak transcription Brain Anterior Caudate brain
21 chr3:99595800-99599800 Weak transcription Fetal Intestine Small intestine
22 chr3:99595800-99599800 Weak transcription Right Atrium heart
23 chr3:99595800-99600400 Weak transcription Ovary ovary
24 chr3:99595800-99601200 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr3:99595800-99603200 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr3:99596000-99599600 Weak transcription Rectal Smooth Muscle rectum
27 chr3:99596000-99599800 Weak transcription Colon Smooth Muscle Colon
28 chr3:99596000-99599800 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr3:99596000-99603000 Weak transcription Duodenum Mucosa Duodenum
30 chr3:99596000-99603200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr3:99596200-99599600 Weak transcription Adipose Nuclei Adipose
32 chr3:99596200-99599600 Weak transcription Stomach Smooth Muscle stomach
33 chr3:99596400-99599800 Weak transcription Fetal Muscle Leg muscle
34 chr3:99596600-99600200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr3:99596600-99614200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr3:99596800-99600400 Weak transcription Aorta Aorta
37 chr3:99596800-99601000 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr3:99596800-99602600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr3:99597000-99599800 Weak transcription HSMM muscle
40 chr3:99597000-99603400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr3:99597200-99602800 Weak transcription K562 blood
42 chr3:99597200-99603000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr3:99597200-99603400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr3:99597200-99614200 Weak transcription HMEC breast
45 chr3:99597400-99598600 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr3:99597400-99599600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr3:99597400-99599600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr3:99597400-99599800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr3:99597400-99599800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr3:99597400-99602800 Weak transcription NHEK skin

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Last update: Aug 31, 2015