Variant report

Variant	rs10936008
Chromosome Location	chr3:99686665-99686666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:99686626-99686981	T-47D	breast:	n/a	n/a
2	GATA3	chr3:99686528-99687225	SK-N-SH	brain:	n/a	n/a
3	MYC	chr3:99686660-99687060	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr3:99686351-99686982	H1-neurons	neurons:	n/a	n/a
5	FOS	chr3:99686659-99687005	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr3:99686595-99686960	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr3:99686485-99686965	H1-neurons	neurons:	n/a	n/a
8	GATA3	chr3:99686545-99687188	SK-N-SH	brain:	n/a	n/a
9	FOS	chr3:99686631-99687043	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr3:99686581-99687020	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr3:99686640-99686999	IMR90	lung:	n/a	n/a
12	GATA3	chr3:99686504-99687112	MCF-7	breast:	n/a	n/a
13	FOS	chr3:99686657-99687046	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr3:99686646-99687001	MCF10A-Er-Src	breast:	n/a	n/a
15	GATA3	chr3:99686612-99686985	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99592456..99594885-chr3:99685238..99688172,2	MCF-7	breast:
2	chr3:99686155..99688649-chr3:99689841..99691929,2	MCF-7	breast:

Variant related genes	Relation type
MIR3921	TF binding region

Extended variants
information (count: 134 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10049383	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1016914	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1017968	0.89[JPT][hapmap]
rs1021102	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1021103	0.91[JPT][hapmap]
rs10212525	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs1021341	0.91[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.86[MKK][hapmap]
rs1038294	0.91[JPT][hapmap]
rs10511177	0.91[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.86[MKK][hapmap]
rs1059905	0.82[AMR][1000 genomes]
rs1087198	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10936005	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1287283	1.00[ASW][hapmap];0.90[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13059754	0.82[TSI][hapmap]
rs13064704	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs13069311	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs13317017	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13323143	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1384062	0.82[TSI][hapmap]
rs1387647	0.80[TSI][hapmap]
rs1489816	0.82[JPT][hapmap]
rs1688766	0.91[JPT][hapmap]
rs1688771	0.91[JPT][hapmap]
rs1688774	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1688782	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17174947	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1718244	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1718245	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2452320	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2452321	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4075038	0.83[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs4244711	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4244713	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4361315	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap]
rs4479633	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4571265	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs4577503	0.82[TSI][hapmap]
rs4928150	0.82[TSI][hapmap]
rs4928153	0.80[TSI][hapmap]
rs4928232	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6440938	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6440967	0.82[TSI][hapmap]
rs6765027	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6790535	0.91[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap]
rs6790877	0.90[JPT][hapmap]
rs6799379	0.91[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap]
rs6802422	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs6802817	0.82[TSI][hapmap]
rs6803204	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6806178	0.91[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.86[MKK][hapmap]
rs6806323	0.82[TSI][hapmap]
rs6807176	0.91[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap]
rs68092024	0.82[ASN][1000 genomes]
rs6809988	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs704578	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs704579	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs704581	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs704582	0.91[JPT][hapmap]
rs704583	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7609729	0.90[JPT][hapmap]
rs7610486	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs7616988	0.91[ASW][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.86[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7620228	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs7627991	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs7629426	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7636447	0.94[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7638900	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7649349	0.82[TSI][hapmap]
rs766778	0.82[TSI][hapmap]
rs793440	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793442	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793443	0.82[TSI][hapmap]
rs793445	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793447	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793448	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793449	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793452	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793453	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793455	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793458	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793459	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793460	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793461	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793462	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793463	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793464	0.82[TSI][hapmap]
rs793465	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793466	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793467	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793468	0.95[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793470	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793471	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs793474	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793479	0.81[JPT][hapmap]
rs793492	0.91[JPT][hapmap]
rs793494	0.90[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs793495	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs793496	0.91[JPT][hapmap]
rs793499	0.91[JPT][hapmap]
rs793501	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793503	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs796976	0.82[TSI][hapmap]
rs796977	0.94[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs796978	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs809415	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs812657	0.95[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs902159	0.82[TSI][hapmap]
rs923470	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs923471	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs9814359	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs9815439	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs9817005	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9823908	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs9828079	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs9833888	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs9833980	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs9837602	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs9841186	0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs9851645	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs9864437	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs9872871	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9873709	0.91[ASW][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs9873878	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs9875640	0.83[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	esv3325883	chr3:99684162-99687960	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10936008	SENP7	cis	parietal	SCAN
rs10936008	FILIP1L	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99671600-99688200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:99677400-99696600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:99677600-99692600	Weak transcription	Fetal Lung	lung
4	chr3:99678800-99691800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:99679600-99688200	Weak transcription	GM12878-XiMat	blood
6	chr3:99679600-99697000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:99683000-99687200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:99683400-99687000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:99683400-99687200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:99683600-99688600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:99684200-99687400	Enhancers	HSMMtube	muscle
12	chr3:99684200-99688600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:99684200-99688800	Enhancers	NHEK	skin
14	chr3:99684400-99688600	Enhancers	Psoas Muscle	Psoas
15	chr3:99685000-99687000	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:99685400-99687000	Enhancers	Stomach Mucosa	stomach
17	chr3:99685400-99687200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:99685400-99691400	Weak transcription	Right Atrium	heart
19	chr3:99685600-99688000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr3:99685800-99687000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99685800-99688400	Weak transcription	Left Ventricle	heart
22	chr3:99685800-99688600	Enhancers	HMEC	breast
23	chr3:99686000-99690400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:99686200-99687000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:99686200-99688600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:99686400-99687000	Enhancers	HSMM	muscle
27	chr3:99686400-99687400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:99686400-99689600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:99686400-99691200	Weak transcription	Fetal Stomach	stomach
30	chr3:99686400-99691400	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:99686400-99691800	Weak transcription	Fetal Intestine Small	intestine
32	chr3:99686600-99687200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:99686600-99687200	Strong transcription	Primary B cells from cord blood	blood
34	chr3:99686600-99687600	Weak transcription	Aorta	Aorta
35	chr3:99686600-99691200	Weak transcription	Fetal Muscle Leg	muscle
36	chr3:99686600-99691200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr3:99686600-99693400	Weak transcription	Placenta	Placenta

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