Variant report

Variant	rs9833888
Chromosome Location	chr3:99723580-99723581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:99723070..99725877-chr3:99978503..99980301,2	MCF-7	breast:
2	chr3:99705385..99708827-chr3:99720207..99724283,4	MCF-7	breast:
3	chr3:99535115..99538387-chr3:99721301..99723851,3	MCF-7	breast:
4	chr3:99589389..99592521-chr3:99720573..99723632,4	MCF-7	breast:
5	chr3:99592735..99594887-chr3:99722394..99724729,2	MCF-7	breast:
6	chr3:99652546..99654648-chr3:99721251..99724198,2	MCF-7	breast:
7	chr3:99719980..99722131-chr3:99722963..99725848,2	K562	blood:
8	chr3:99564424..99566018-chr3:99722701..99724331,2	MCF-7	breast:
9	chr3:99593399..99595369-chr3:99721874..99725950,4	MCF-7	breast:
10	chr3:99720592..99723772-chr3:99724475..99727275,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184220	Chromatin interaction
ENSG00000036054	Chromatin interaction
ENSG00000168386	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10049383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1016914	0.91[JPT][hapmap]
rs1017968	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1021102	0.90[JPT][hapmap]
rs1021103	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10212525	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021341	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10511177	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1087198	0.87[ASW][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap]
rs10936005	0.91[JPT][hapmap]
rs10936008	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs13064704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13069311	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13093838	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13317017	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs13323143	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1489816	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16841920	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs1688766	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs1688782	0.91[JPT][hapmap]
rs17379739	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392948	0.86[ASW][hapmap];0.93[CEU][hapmap];0.84[GIH][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17393059	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291494	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2291495	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2315840	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs2452320	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs2452321	0.91[JPT][hapmap]
rs28503408	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28714363	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34922392	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34996634	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35154249	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35521705	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35669453	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35844878	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35885423	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4075038	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs4244711	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs4244713	0.87[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap]
rs4279135	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4361315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs4479633	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs4571265	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928149	0.86[ASW][hapmap];0.93[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap]
rs4928232	0.87[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs4928234	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62285461	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62285462	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62285471	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62285473	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62285478	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6440938	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs6765027	0.87[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs6790535	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799379	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6802422	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6806178	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6807176	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6809988	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs704581	0.81[JPT][hapmap]
rs704582	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs704583	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs71313585	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7609729	1.00[JPT][hapmap]
rs7610486	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616988	0.94[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs7620228	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7627991	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7629426	0.91[JPT][hapmap]
rs7636447	0.91[JPT][hapmap]
rs7638900	0.91[JPT][hapmap]
rs793440	0.91[JPT][hapmap]
rs793445	0.91[JPT][hapmap]
rs793452	0.91[JPT][hapmap]
rs793453	0.91[JPT][hapmap]
rs793460	0.91[JPT][hapmap]
rs793461	0.91[JPT][hapmap]
rs793462	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs793463	0.87[ASW][hapmap];0.91[JPT][hapmap]
rs793465	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs793466	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs793467	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs793468	0.91[JPT][hapmap]
rs793470	0.91[JPT][hapmap]
rs793474	0.91[JPT][hapmap]
rs793499	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs793503	0.91[JPT][hapmap]
rs796977	0.90[JPT][hapmap]
rs796978	0.91[JPT][hapmap]
rs809415	0.91[JPT][hapmap]
rs812657	0.87[ASW][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs923470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs923471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289985	0.81[CEU][hapmap]
rs9810235	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814359	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815439	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9823908	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9828079	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9832186	0.90[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833980	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9834484	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9837602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9841186	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9851645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9852435	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9853823	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854260	0.87[CEU][hapmap]
rs9860290	0.87[CEU][hapmap];0.84[MEX][hapmap]
rs9864437	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9872871	0.91[JPT][hapmap]
rs9873709	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875640	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875664	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875878	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs9878931	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv999332	chr3:99690207-99774720	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9833888	FILIP1L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99708400-99724600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:99713600-99787800	Weak transcription	Primary T cells from cord blood	blood
3	chr3:99714600-99724400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:99714800-99724600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:99715800-99724200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:99716400-99758800	Weak transcription	Primary B cells from cord blood	blood
7	chr3:99720200-99727600	Enhancers	Stomach Mucosa	stomach
8	chr3:99720600-99724400	Enhancers	Fetal Intestine Large	intestine
9	chr3:99720800-99724800	Weak transcription	Psoas Muscle	Psoas
10	chr3:99720800-99725000	Enhancers	Fetal Intestine Small	intestine
11	chr3:99721400-99725000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr3:99721400-99729400	Enhancers	HUVEC	blood vessel
13	chr3:99721600-99723600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr3:99721600-99724200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr3:99721800-99724400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:99722000-99724200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:99722000-99724400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:99722000-99724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:99722000-99724600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99722000-99724600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99722000-99724600	Weak transcription	Gastric	stomach
22	chr3:99722000-99724600	Weak transcription	Pancreas	Pancrea
23	chr3:99722000-99725800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:99722000-99726200	Weak transcription	Fetal Stomach	stomach
25	chr3:99722000-99726400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:99722000-99726400	Weak transcription	Right Atrium	heart
27	chr3:99722200-99724200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:99722200-99724600	Weak transcription	Fetal Lung	lung
29	chr3:99722200-99724800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:99722200-99724800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:99722200-99725600	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:99722200-99725600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:99722200-99726400	Weak transcription	K562	blood
34	chr3:99722400-99723800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:99722400-99724200	Weak transcription	HSMM	muscle
36	chr3:99722400-99724400	Weak transcription	Right Ventricle	heart
37	chr3:99722400-99724600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:99722400-99724600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:99722400-99724600	Weak transcription	Left Ventricle	heart
40	chr3:99722400-99725200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr3:99722400-99727000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:99722400-99741400	Weak transcription	Aorta	Aorta
43	chr3:99722400-99751000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:99722600-99724000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:99722600-99724000	Weak transcription	Fetal Kidney	kidney
46	chr3:99722600-99724000	Weak transcription	Osteobl	bone
47	chr3:99722600-99724600	Weak transcription	A549	lung
48	chr3:99722600-99724600	Weak transcription	NH-A	brain
49	chr3:99722600-99724600	Weak transcription	NHDF-Ad	bronchial
50	chr3:99722600-99724800	Weak transcription	Duodenum Mucosa	Duodenum

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